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Srinivasan, Arumugam ; Mishra, Rakesh K. (2012) Chromatin domain boundary element search tool for Drosophila Nucleic Acids Research, 40 (10). pp. 4385-4395. ISSN 0305-1048

Matharu, Navneet Kaur ; Hussain, Tanweer ; Sankaranarayanan, Rajan ; Mishra, Rakesh K. (2010) Vertebrate homologue of Drosophila GAGA factor Journal of Molecular Biology, 400 (3). pp. 434-447. ISSN 0022-2836

Singh, Vipin ; Mishra, Rakesh K. (2010) RISCI - repeat induced sequence changes identifier: a comprehensive, comparative genomics-based, in silico subtractive hybridization pipeline to identify repeat induced sequence changes in closely related genomes BMC Bioinformatics, 11 (1). p. 609. ISSN 1471-2105

Boiziau, C. ; Mishra, R. K. ; Duconge, F. ; Toulme, J. J. ; Dausse, E. (2009) Identification of aptamers against the DNA template for in vitro transcription of the HIV-1 TAR element Antisense and Nucleic Acid Drug Development, 7 (4). pp. 369-380. ISSN 1087-2906

Rao, L. ; Turlapati, R. ; Patel, M. ; Panda, B. ; Tosh, D. ; Mangalipalli, S. ; Tiwari, A. ; Orunganti, V. P. ; Mishra, R. K. ; Rose, D. ; et, al. (2009) Cytogenetic Characterization and fluorescence in situ hybridization of (GATA)₁₀ repeats on established primary cell cultures from Indian water snake (natrix piscator) and Indian mugger (crocodylus palustris) embryos Cytogenetic and Genome Research, 127 (2-4). pp. 287-296. ISSN 1424-8581

Senthilkumar, Ramamoorthy ; Mishra, Rakesh K. (2009) Novel motifs distinguish multiple homologues of Polycomb in vertebrates: expansion and diversification of the epigenetic toolkit BMC Genomics, 10 (1). p. 549. ISSN 1471-2164

Anitha, M. ; Kallappagoudar, Satish ; Pathak, Rashmi U. ; Mishra, Krishnaveni ; Rangaraj, Nandini ; Jagannadham, M. V. ; Sundaram, C. S. ; Mishra, Rakesh K. (2008) Characterization of nuclear matrix proteome of Drosophila melanogaster during embryonic development Journal of Proteomics & Bioinformatics, S2 (01). 092. ISSN 0974-276X

Mishra, Rakesh K. (2007) Chromatin domain boundaries: defining the functional domains in genome Proceedings of the Indian National Science Academy , 73 (4). pp. 239-253. ISSN 0073-6600

Schweinsberg, Susan ; Hagstrom, Kirsten ; Gohl, Daryl ; Schedl, Paul ; Kumar, Ram P. ; Mishra, Rakesh ; Karch, Francois (2004) The enhancer-blocking activity of the Fab-7 boundary from the Drosophila bithorax complex requires GAGA-factor-binding sites Genetics, 168 (3). pp. 1371-1384. ISSN 0016-6731

Mishra, Rakesh K. (2004) Bridging the gap but breaking the rule: a tunicate twists the hox puzzle Current Science, 87 (8). pp. 1038-1040. ISSN 0011-3891

Sabarinadh, Chilaka ; Subramanian, Subbaya ; Tripathi, Anshuman ; Mishra, Rakesh K. (2004) Extreme conservation of noncoding DNA near HoxD complex of vertebrates BMC Genomics, 5 (1). p. 75. ISSN 1471-2164

Mishra, Krishnaveni ; Chopra, Vivek S. ; Srinivasan, Arumugam ; Mishra, Rakesh K. (2003) Trl-GAGA directly interacts with lola like and both are part of the repressive complex of polycomb group of genes Mechanisms of Development, 120 (6). pp. 681-689. ISSN 0925-4773

Subramanian, Subbaya ; Mishra, Rakesh K. ; Singh, Lalji (2003) Genome-wide analysis of Bkm sequences (GATA repeats): predominant association with sex chromosomes and potential role in higher order chromatin organization and function Bioinformatics, 19 (6). pp. 681-685. ISSN 1367-4803

Subramanian, S. ; Madgula, V. M. ; George, R. ; Mishra, R. K. ; Pandit, M. W. ; Kumar, C. S. ; Singh, L. (2003) Triplet repeats in human genome: distribution and their association with genes and other genomic regions Bioinformatics, 19 (5). pp. 549-552. ISSN 1367-4803

Mishra, Rakesh K. ; Mihaly, Jozsef ; Barges, Stephane ; Spierer, Annick ; Karch, Francois ; Hagstrom, Kirsten ; Schweinsberg, Susan E. ; Schedl, Paul (2001) The iab-7 polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity Molecular and Cellular Biology, 21 (4). pp. 1311-1318. ISSN 0270-7306

Mishra, Rakesh K. ; Karch, Francois (1999) Boundaries that demarcate structural and functional domains of chromatin Journal of Biosciences, 24 (3). pp. 377-399. ISSN 0250-5991

Mishra, Rakesh K. (1999) Getting at the core of the colinearity of Hox genes Current Science, 77 (2). pp. 213-216. ISSN 0011-3891

Mihaly, Jozsef ; Mishra, Rakesh K. ; Karch, Francois (1998) A conserved sequence motif in polycomb-response elements Molecular Cell, 1 (7). pp. 1065-1066. ISSN 1097-2765

Mihaly, J. ; Hogga, I. ; Barges, S. ; Galloni, M. ; Mishra, R. K. ; Hagstrom, K. ; Muller, M. ; Schedl, P. ; Sipos, L. ; Gausz, J. ; et, al. (1998) Chromatin domain boundaries in the bithorax complex Cellular and Molecular Life Sciences, 54 (1). pp. 60-70. ISSN 1420-9071

Tinevez, Rejane Le ; Mishra, Rakesh K. ; Toulme, Jean-Jacques (1998) Selective inhibition of cell-free translation by oligonucleotides targeted to a mRNA hairpin structure Nucleic Acids Research, 26 (10). pp. 2273-2278. ISSN 0305-1048

Mishra, Rakesh K. ; Eliceiri, George L. (1997) Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing Proceedings of the National Academy of Sciences of the United States of America, 94 (10). pp. 4972-4977. ISSN 0027-8424

Mishra, R. K. ; Tinevez, Le R. ; Toulme, J. J. (1996) Targeting nucleic acid secondary structures by antisense oligonucleotides designed through in vitro selection Proceedings of the National Academy of Sciences of the United States of America, 93 (20). pp. 10679-10684. ISSN 0027-8424

Mishra, Rakesh Kumar ; Moreau, Catherine ; Ramazeilles, Claude ; Moreau, Serge ; Bonnet, Jacques ; Toulmé, Jean-Jacques (1995) Improved leishmanicidal effect of phosphorotioate antisense oligonucleotides by LDL-mediated delivery Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, 1264 (2). pp. 229-237. ISSN 0167-4781

Mishra, R. K. ; Toulme, J. J. (1994) In vitro selection of antisense oligonucleotides targeted to a hairpin structure Comptes Rendus de l'Academie des Sciences - Series III: Sciences de la Vie, 317 (11). pp. 977-982. ISSN 0764-4469

Ramazeilles, C. ; Mishra, R. K. ; Moreau, S. ; Pascolo, E. ; Toulme, J. J. (1994) Antisense phosphorothioate oligonucleotides: selective killing of the intracellular parasite Leishmania amazonensis Proceedings of the National Academy of Sciences of the United States of America, 91 (17). pp. 7859-7863. ISSN 0027-8424

Jyothirmai, G. ; Mishra, Rakesh K. (1994) Differential influence of DNA supercoiling on in vivo strength of promoters varying in structure and organisation in E. coli FEBS Letters, 340 (3). pp. 189-192. ISSN 0014-5793

Mehrotra, Jyoti ; Misra, Krishna ; Mishra, Rakesh K. (1994) DNA Intercalation and photoinduced cleavage by 4-nitro(N-hexylamine)1,8-naphthalimide Nucleosides and Nucleotides, 13 (4). pp. 963-978. ISSN 0732-8311

Ranganathan, Darshan ; Patel, Bhisma Kumar ; Mishra, Rakesh K. (1994) Design of a simple and flexible dimeric peptide model for DNA recognition and scission Journal of the Chemical Society, Chemical Communications (1). pp. 107-109. ISSN 0022-4936

Mishra, Rakesh K. ; Chatterji, Dipankar (1993) Mechanism of initiation of transcription by Escherichia coli RNA polymerase on supercoiled template Molecular Microbiology, 8 (3). pp. 507-515. ISSN 0950-382X

Mishra, Rakesh K. (1993) Inheritance of chromatin structure Current Science, 64 (4). pp. 212-214. ISSN 0011-3891

Ranganathan, Darshan ; Patel, Bhisma Kumar ; Mishra, Rakesh K. (1993) Design of a chemical nuclease model with (Lys)₂Cu as the core motif Journal of the Chemical Society, Chemical Communications (4). pp. 337-339. ISSN 0022-4936

Mishra, Rakesh K. (1992) Yeast budding forages through redundancy Current Science, 63 (3). pp. 111-112. ISSN 0011-3891

Mehrotra, Jyothi ; Misra, K. ; Mishra, Rakesh K. (1992) Photoinduced DNA strand scission by 1,8-naphthalimide-derived intercalators Current Science, 62 (10). pp. 693-695. ISSN 0011-3891

Mehrotra, Jyoti ; Misra, Krishna ; Mishra, Rakesh K. (1991) Sequence specific chemical recognition of DNA Nucleosides and Nucleotides, 10 (1-3). pp. 609-612. ISSN 0732-8311

Mishra, Rakesh K. ; Gopal, Vijaya ; Chatterji, Dipankar (1990) Correlation between the DNA supercoiling and the initiation of transcription by Escherichia coli RNA polymerase in vitro: role of the sequences upstream of the promoter region FEBS Letters, 260 (2). pp. 273-276. ISSN 0014-5793

Brahmachari, Samir K. ; Mishra, Rakesh K. ; Bagga, Rajesh ; Ramesh, N. (1989) DNA duplex with the potential to change handedness after every half a turn Nucleic Acids Research, 17 (18). pp. 7273-7281. ISSN 0305-1048

Majumder, Kumud ; Mishra, Rakesh K. ; Bansal, Manju ; Brahmachari, Samir K. (1989) Sequence criteria for Z-DNA formation: studies on poly d(ACGT) Nucleic Acids Research, 17 (1). p. 450. ISSN 0305-1048

Kadalayil, L. P. ; Mishra, R. K. ; Brahmachari, S. K. ; Majumder, K. (1988) Sequence specificity of Z-DNA formation in oligonucleotides Biochemistry International, 17 (1). pp. 121-131. ISSN 0158-5231

Mishra, R. K. ; Brahmachari, S. K. (1988) Synthesis of a novel polynucleotide: potential R-L model Current Science, 57 (11). pp. 574-577. ISSN 0011-3891

Mishra, Rakesh K. ; Latha, P. K. ; Brahmachari, Samir K. (1988) Interruptions of (CG)_n sequences by GG, TG and CA need not prevent B to Z transition in solution Nucleic Acids Research, 16 (10). pp. 4651-4665. ISSN 0305-1048

Mishra, Rakesh K. ; Misra, K. (1986) Improved synthesis of oligodeoxyribonucleotide using 3-methoxy-4-phenoxybenzoyl group for amino protection Nucleic Acids Research, 14 (15). pp. 6197-6213. ISSN 0305-1048