Browse by Fellow

Goldsmith, Gunaseelan ; Rathinavelan, Thenmalarchelvi ; Yathindra, Narayanarao (2016) Correction: Selective Preference of Parallel DNA Triplexes Is Due to the Disruption of Hoogsteen Hydrogen Bonds Caused by the Severe Nonisostericity between the G*GC and T*AT Triplets PLoS One, 11 (5). e0155090. ISSN 1932-6203

Ananth, Prakash ; Goldsmith, Gunaseelan ; Yathindra, Narayanarao (2013) An innate twist between Crick’s wobble and Watson-Crick base pairs RNA, 19 (8). pp. 1038-1053. ISSN 1355-8382

Yathindra, N. (2010) Structure of an enzyme revealed 80 years after it was crystallized – differential functional behaviour of plant and microbial ureases uncovered Current Science, 99 (5). pp. 566-568. ISSN 0011-3891

Rathinavelan, T. ; Yathindra, N. (2006) Base triplet nonisomorphism strongly influences DNA triplex conformation: Effect of nonisomorphic G* GC and A* AT triplets and bending of DNA triplexes Biopolymers, 82 (5). pp. 443-461. ISSN 0006-3525

Rathinavelan, Thenmalarchelvi ; Yathindra, Narayanarao (2005) Molecular dynamics structures of peptide nucleic acid · DNA hybrid in the wild-type and mutated alleles of Ki-ras proto-oncogene. stereochemical rationale for the low affinity of PNA in the presence of an A...C mismatch FEBS Journal, 272 (16). pp. 4055-4070. ISSN 1742-464X

Thenmalarchelvi, R. ; Yathindra, N. (2005) New insights into DNA triplexes: residual twist and radial difference as measures of base triplet non-isomorphism and their implication to sequence-dependent non-uniform DNA triplex Nucleic Acids Research, 33 (1). pp. 43-55. ISSN 0305-1048

Premraj, Bernard J. ; Raja, Swaminathan ; Bhavesh, Neel S. ; Shi, Ke ; Hosur, Ramakrishna V. ; Sundaralingam, Muttaiya ; Yathindra, Narayanarao (2004) Solution structure of 2',5' d(G₄C₄). Relevance to topological restrictions and nature's choice of phosphodiester links European Journal of Biochemistry, 271 (14). pp. 2956-2966. ISSN 0014-2956

Premraj, B. J. ; Raja, S. ; Yathindra, N. (2002) Structural basis for the unusual properties of 2',5' nucleic acids and their complexes with RNA and DNA Biophysical Chemistry, 95 (3). pp. 253-272. ISSN 0301-4622

Premraj, B. J. ; Patel, P. K. ; Kandimalla, E. R. ; Agrawal, S. ; Hosur, R. V. ; Yathindra, N. (2001) NMR structure of a 2',5' RNA favors: a type duplex with compact C2'endo nucleotide repeat Biochemical and Biophysical Research Communications, 283 (3). pp. 537-543. ISSN 0006-291X

Xodo, Luigi E. ; Rathinavelan, Thenmalarchelvi ; Quadrifoglio, Franco ; Manzini, Giorgio ; Yathindra, Narayanarao (2001) Targeting neighbouring poly(purine·pyrimidine) sequences located in the human bcr promoter by triplex-forming oligonucleotides European Journal of Biochemistry, 268 (3). pp. 656-664. ISSN 0014-2956

Premraj, B. J. ; Yathindra, N. (1998) Stereochemistry of 2',5' nucleic acids and their constituents Journal of Biomolecular Structure & Dynamics, 16 (2). pp. 313-328. ISSN 0739-1102

Lalitha, V. ; Yathindra, N. (1994) Visualisation of inter loop tertiary base pairing and stacking interactions in an unusual slipped loop DNA structure Proceedings of the Indian Academy of Sciences - Chemical Sciences, 106 (5). pp. 989-1002. ISSN 0253-4134

Manzini, G. ; Yathindra, N. ; Xodo, L. E. (1994) Evidence for intramolecularly folded i-DNA structures in biologically relevant CCC-repeat sequences Nucleic Acids Research, 22 (22). pp. 4634-4640. ISSN 0305-1048

Mohan, S. ; Yathindra, N. (1994) A study of the interaction of DAPI with DNA containing AT and non-AT sequences--molecular specificity of minor groove binding drugs Journal of Biomolecular Structure & Dynamics, 11 (4). pp. 849-867. ISSN 0739-1102

Sekharudu, C. Y. ; Yathindra, N. ; Sundaralingam, M. (1993) Molecular dynamics investigations of DNA triple helical models: unique features of the Watson-Crick duplex Journal of Biomolecular Structure & Dynamics, 11 (2). pp. 225-244. ISSN 0739-1102

Swarnalatha, Y. ; Yathindra, N. (1993) Stereochemical effects of methylphosphonate in B- and Z-DNA helices: variation in hydrophobicity and effective widths of grooves Journal of Biomolecular Structure & Dynamics, 10 (6). pp. 1023-1045. ISSN 0739-1102

Swarna Latha, Y. ; Yathindra, N. (1992) Stereochemical studies on nucleic acid analogues. I. Conformations of α -nucleosides and α -nucleotides: interconversion of sugar puckers via O4'-exo Biopolymers, 32 (3). pp. 249-269. ISSN 0006-3525

Mohan, S. ; Yathindra, N. (1992) Flexibility of DNA in 2:1 drug-DNA complexes--simultaneous binding of two DAPI molecules to DNA Journal of Biomolecular Structure & Dynamics, 9 (4). pp. 695-704. ISSN 0739-1102

Mohan, S. ; Yathindra, N. (1992) Sequence effects on the propeller twist of base pairs in DNA helices Journal of Biomolecular Structure & Dynamics, 9 (6). pp. 1195-1211. ISSN 0739-1102

Swarna Latha, Y. ; Yathindra, N. (1991) Stereochemical effects of non-ionic methylphosphonates on nucleotide conformations International Journal of Biological Macromolecules, 13 (5). pp. 301-306. ISSN 0141-8130

Swarna Latha, Y. ; Yathindra, N. (1991) Molecular mechanics studies of dinucleoside methylphosphonates: influence of methylphosphonate and its chirality on the phosphodiester conformation Journal of Biomolecular Structure & Dynamics, 9 (3). pp. 613-631. ISSN 0739-1102

Mohan, S. ; Yathindra, N. (1991) Studies on the cross stand hydrogen bonds in DNA double helices Journal of Biomolecular Structure & Dynamics, 9 (1). pp. 113-126. ISSN 0739-1102

Xodo, Luigi Emilio ; Manzini, Giorgio ; Quadrifoglio, Franco ; Yathindra, Narayanarao ; van der Marel, Gijs A. ; van Boom, Jacques H. (1989) A facile duplex-hairpin interconversion through a cruciform intermediate in a linear DNA fragment Journal of Molecular Biology, 205 (4). pp. 777-781. ISSN 0022-2836

Xodo, LE ; Manzini, G. ; Quadrifoglio, F. ; Yathindra, N. ; van der Marel, G. A. ; van Boom, J. H. (1989) The left-handed Z-DNA conformation in oligodeoxynucleotides containing different amounts of AT base pairs: a far UV circular dichroism study Journal of Biomolecular Structure & Dynamics, 6 (6). pp. 1217-1231. ISSN 0739-1102

Sundaralingam, M. ; Sekharudu, Y. C. ; Yathindra, N. ; Ravichandran, V. (1987) Stabilization of alpha helices by ion pairs International Journal of Quantum Chemistry, 32 (14). pp. 289-296. ISSN 0020-7608

Sundaralingam, M. ; Sekharudu, Y. C. ; Yathindra, N. ; Ravichandran, V. (1987) Ion pairs in alpha helices Proteins Structure Function and Bioinformatics, 2 (1). pp. 64-71. ISSN 1097-0134

Malathi, R. ; Yathindra, N. (1985) Chain flexibility and configurational dimensions of left handed Z- DNA and right handed B-DNA helices Journal of Biosciences, 8 (3-4). pp. 615-625. ISSN 0250-5991

Malathi, R. ; Yathindra, N. (1985) Backbone conformation in nucleic acids: an analysis of local helicity through heminucleotide scheme and a proposal for a unified conformational plot Journal of Biomolecular Structure & Dynamics, 3 (1). pp. 127-144. ISSN 0739-1102

Quadrifoglio, Franco ; Manzini, Giorgio ; Yathindra, Narayanarao (1984) Short oligodeoxynucleotides with d(G-C)_n sequence do not assume left-handed conformation in high salt conditions Journal of Molecular Biology, 175 (3). pp. 419-423. ISSN 0022-2836

Malathi, R. ; Yathindra, N. (1984) Tertiary structure of tRNA^Phe. A possible correlation between the structural functional unit of this tRNA and its exonic sequence Biochemical Journal, 219 (1). pp. 341-344. ISSN 0264-6021

Malathi, R. ; Yathindra, N. (1983) The heminucleotide scheme: an effective probe in the analysis and description of ordered polynucleotide structures Biopolymers, 22 (9). pp. 2061-2076. ISSN 0006-3525

Quadrifoglio, F. ; Manzini, G. ; Yathindra, N. ; Crea, R. (1983) Relative Stability of B and Z Structures in Oligodeoxynucleotides with Different Alternating Base Sequence and Length In: Nucleic Acids: The Vectors of Life.

Malathi, R. ; Yathindra, N. (1982) Polynucleotide folding in yeast tRNA^Phe: Elucidation of short-, medium-, and long-range interactions of sugar-phosphate-sugar backbone and base using a "blocked" nucleotide probe Biopolymers, 21 (10). pp. 2033-2047. ISSN 0006-3525

Jayaraman, S. ; Yathindra, N. ; Sundaralingam, M. (1982) Backbone conformations in nucleic acids: the occurrence of g⁺g⁺ internucleotide phosphodiester conformation Biopolymers, 21 (6). pp. 1207-1216. ISSN 0006-3525

Malathi, R. ; Yathindra, N. (1982) Random coil conformations of polynucleotides: a study incorporating long-range correlations due to dynamics of the sugar residue International Journal of Biological Macromolecules, 4 (1). pp. 18-24. ISSN 0141-8130

Malathi, R. ; Yathindra, N. (1982) Secondary and tertiary structural foldings in tRNA. A diagonal plot analysis using the blocked nucleotide scheme The Chemical Engineering Journal and the Biochemical Engineering Journal, 205 (2). pp. 457-460. ISSN 0923-0467

Jayaraman, S. ; Yathindra, N. (1981) Probing possible left- and right-handed poly(dinucleotide) helical conformations from (n-h) plots. Models for polysequential nucleotides International Journal of Quantum Chemistry, 20 (1). pp. 211-230. ISSN 0020-7608

Malathi, R. ; Yathindra, N. (1981) Virtual bond probe to study ordered and random coil conformations of nucleic acids International Journal of Quantum Chemistry, 20 (1). pp. 241-257. ISSN 0020-7608

Jayaraman, S. ; Yathindra, N. (1980) Theoretical analysis of conformational possibilities of Z-DNA Biochemical and Biophysical Research Communications, 97 (4). pp. 1407-1419. ISSN 0006-291X

Vijayaiakshmi, K. S. ; Yathindra, N. (1980) Conformational analysis of nucleoside and nucleotide antibiotics possessing five-membered base rings. A comparison of the glycosyl barrier for purine, pyrimidine and imidazole rings Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, 607 (1). pp. 171-186. ISSN 0005-2787

Yathindra, N. ; Sundaralingam, M. (1979) Effect of O(2')-methylation on the stability of polynucleotide helices Biopolymers, 18 (11). pp. 2721-2731. ISSN 0006-3525

Yathindra, N. ; Sundaralingam, M. (1979) Conformational analysis of arabinonucleosides and nucleotides a comparison with the ribonucleosides and nucleotides Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, 564 (2). pp. 301-310. ISSN 0005-2787

Sundaralingam, M. ; Yathindra, N. (1977) Probing possible left-and right-handed polynucleotide helical conformations from n-h plots. Glycosyl and backbone torsional variation on handedness of helix International Journal of Quantum Chemistry, 12 (S4). pp. 285-303. ISSN 0020-7608

Srinivasan, A. R. ; Yathindra, N. (1977) A novel representation of the conformational structure of transfer RNAs. Correlation of the folding patterns of the polynucleotide chain with the base sequence and the nucleotide backbone torsions Nucleic Acids Research, 4 (11). pp. 3969-3980. ISSN 0305-1048

Sundaralingam, M. ; Mizuno, H. ; Stout, C. D. ; Rao, S. T. ; Liedman, M. ; Yathindra, N. (1976) Mechanisms of chain folding in nucleic acids. The (ω', ω) plot and its correlation to the nucleotide geometry in yeast tRNA^Phe1 Nucleic Acids Research, 3 (10). pp. 2471-2484. ISSN 0305-1048

Yathindra, N. ; Sundaralingam, M. (1976) Analysis of the possible helical structures of nucleic acids and polynucleotides. Application of (n-h) plots Nucleic Acids Research, 3 (3). pp. 729-748. ISSN 0305-1048

Yathindra, N. ; Sundaralingam, M. (1975) Backbone conformations in deoxyribonucleic acids. Conformational role of the 2'-hydroxyl group on the internucleotide phosphodiester conformations Biopolymers, 14 (11). pp. 2387-2399. ISSN 0006-3525

Prusiner, P. ; Yathindra, N. ; Sundaralingam, M. (1974) Effect of ribose O(2')-methylation on the conformation of nucleosides and nucleotides Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, 366 (2). pp. 115-123. ISSN 0005-2787

Yathindra, N. ; Sundaralingam, M. (1974) Conformations of cyclic 2',3'-nucleotides and 2',3'-cyclic-5'-diphosphates. Interrelation between the phase angle of pseudorotation of the sugar and the torsions about the glycosyl C(1')-N and the backbone C(4') - C(5') bonds Biopolymers, 13 (10). pp. 2061-2076. ISSN 0006-3525

Yathindra, N. ; Sundaralingam, M. (1974) Conformations of cyclic 3',5'-nucleotides. Effect of the base on the syn-anti conformer distribution Biochemical and Biophysical Research Communications, 56 (1). pp. 119-126. ISSN 0006-291X

Yathindra, N. ; Sundaralingam, M. (1973) Conformational studies on pyrimidine 5'-monophosphates and 3',5'-diphosphates. Effect of the phosphate groups on the backbone conformation of polynucleotides Biopolymers, 12 (10). pp. 2261-2277. ISSN 0006-3525

Yathindra, N. ; Sundaralingam, M. (1973) Conformational studies on guanosine nucleotides and polynucleotides. The effect of the base on the glycosyl and backbone conformations Biopolymers, 12 (9). pp. 2075-2082. ISSN 0006-3525

Yathindra, N. ; Sundaralingam, M. (1973) Potential energy calculations on conformations of puromycin and 3'-terminal aminoacyl adenosines of transfer RNAs Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, 308 (1). pp. 17-27. ISSN 0005-2787

McAlister, J. ; Yathindra, N. ; Sundaralingam, M. (1973) Potential energy calculations on phospholipids. Preferred conformations with intramolecular stacking and mutally tilted hydrocarbon chain planes Biochemistry, 12 (6). pp. 1189-1195. ISSN 0006-2960

Yathindra, N. ; Sundaralingam, M. (1973) Correlation between the backbone and side chain conformations in 5'-nucleotides. The concept of a 'rigid' nucleotide conformation Biopolymers, 12 (2). pp. 297-314. ISSN 0006-3525

Yathindra, N. ; Rao, V. S. R. (1972) Electronic charge distribution in mono, di, and polysaccharides Carbohydrate Research, 25 (1). pp. 256-260. ISSN 0008-6215

Rao, V. S. R. ; Yathindra, N. ; Sundararajan, P. R. (1969) Configurational statistics of polysaccharide chains. Part I. Amylose Biopolymers, 8 (3). pp. 325-333. ISSN 0006-3525