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Pavan Kumar, Y. ; Saha, Puja ; Saha, Dhurjhoti ; Bessi, Irene ; Schwalbe, Harald ; Chowdhury, Shantanu ; Dash, Jyotirmayee (2016) Fluorescent dansyl-guanosine conjugates that bind c-MYC promoter G-quadruplex and downregulate c-MYC expression ChemBioChem, 17 (5). pp. 388-393. ISSN 1439-4227

Narang, Pankaj ; Dhapola, Parashar ; Chowdhury, Shantanu (2016) BreCAN-DB: a repository cum browser of personalized DNA breakpoint profiles of cancer genomes Nucleic Acids Research, 44 (D1). D952-D958. ISSN 0305-1048

Dhapola, Parashar ; Chowdhury, Shantanu (2016) QuadBase2: web server for multiplexed guanine quadruplex mining and visualization Nucleic Acids Research, 44 (W1). W277-W283. ISSN 0305-1048

Datta, Sayantan ; Ray, Anindita ; Singh, Richa ; Mondal, Pinaki ; Basu, Analabha ; De Sarkar, Navonil ; Majumder, Mousumi ; Maiti, Guruparasad ; Baral, Aradhita ; Jha, Ganga Nath ; Mukhopadhyay, Indranil ; Panda, Chinmay ; Chowdhury, Shantanu ; Ghosh, Saurabh ; Roychoudhury, Susanta ; Roy, Bidyut (2015) Sequence and expression variations in 23 genes involved in mitochondrial and non-mitochondrial apoptotic pathways and risk of oral leukoplakia and cancer Mitochondrion, 25 . pp. 28-33. ISSN 1567-7249

Maiti, Guru Prasad ; Ghosh, Amlan ; Mondal, Pinaki ; Baral, Aradhita ; Datta, Sayantan ; Samadder, Sudip ; Nayak, Sandeep P. ; Chakrabarti, Jayanta ; Biswas, Jaydeep ; Sikdar, Nilabja ; Chowdhury, Shantanu ; Roy, Bidyut ; Roychowdhury, Susanta ; Panda, Chinmay Kumar (2015) SNP rs1049430 in the 3'-UTR of SH3GL2 regulates its expression: clinical and prognostic implications in head and neck squamous cell carcinoma Biochimica et Biophysica Acta (BBA)-Protein Structure and Molecular Enzymology, 1852 (5). pp. 1059-1067. ISSN 0167-4838

Kar, Anirban ; Chowdhury, Shantanu (2015) Inhibition of telomerase activity by NME2: impact on metastasis suppression? Naunyn-Schmiedeberg's Archives of Pharmacology, 388 (2). pp. 235-241. ISSN 0028-1298

Pal, Krishnendu ; Pletnev, Alexandre A. ; Dutta, Shamit K. ; Wang, Enfeng ; Zhao, Ruizhi ; Baral, Aradhita ; Yadav, Vinod Kumar ; Aggarwal, Suruchi ; Krishnaswamy, Soundararajan ; Alkharfy, Khalid M. ; Chowdhury, Shantanu ; Spaller, Mark R. ; Mukhopadhyay, Debabrata (2014) Inhibition of endoglin-GIPC interaction inhibits pancreatic cancer cell growth Molecular Cancer Therapeutics, 13 (10). pp. 2264-2275. ISSN 1535-7163

Thakur, Ram Krishna ; Yadav, Vinod Kumar ; Kumar, Akinchan ; Singh, Ankita ; Pal, Krishnendu ; Hoeppner, Luke ; Saha, Dhurjhoti ; Purohit, Gunjan ; Basundra, Richa ; Kar, Anirban ; Halder, Rashi ; Kumar, Pankaj ; Baral, Aradhita ; Mahesh Kumar, M. J. ; Baldi, Alfonso ; Vincenzi, Bruno ; Lorenzon, Laura ; Banerjee, Rajkumar ; Kumar, Praveen ; Shridhar, Viji ; Mukhopadhyay, Debabrata ; Chowdhury, Shantanu (2014) Non-metastatic 2 (NME2)-mediated suppression of lung cancer metastasis involves transcriptional regulation of key cell adhesion factor vinculin Nucleic Acids Research, 42 (18). pp. 11589-11600. ISSN 0305-1048

Yadav, Vinod Kumar ; Thakur, Ram Krishna ; Eckloff, Bruce ; Baral, Aradhita ; Singh, Ankita ; Halder, Rashi ; Kumar, Akinchan ; Alam, Mohammad Parwez ; Kundu, Tapas K. ; Pandita, Raj ; Pandita, Tej K. ; Wieben, Eric D. ; Chowdhury, Shantanu (2014) Promoter-proximal transcription factor binding is transcriptionally active when coupled with nucleosome repositioning in immediate vicinity Nucleic Acids Research, 42 (15). pp. 9602-9611. ISSN 0305-1048

Ghosh, Saptaparni ; Pradhan, Suman Kalyan ; Kar, Anirban ; Chowdhury, Shantanu ; Dasguptaa, Dipak (2013) Molecular basis of recognition of quadruplexes human telomere and c-myc promoter by the putative anticancer agent sanguinarine Biochimica et Biophysica Acta (BBA) - Biomembranes, 1830 (8). pp. 4189-4201. ISSN 0005-2736

Mondal, Pinaki ; Datta, Sayantan ; Maiti, Guru Prasad ; Baral, Aradhita ; Jha, Ganga Nath ; Panda, Chinmay Kumar ; Chowdhury, Shantanu ; Ghosh, Saurabh ; Roy, Bidyut ; Roychoudhury, Susanta (2013) Comprehensive SNP scan of DNA repair and DNA damage response genes reveal multiple susceptibility loci conferring risk to tobacco associated leukoplakia and oral cancer PLoS One, 8 (2). Article ID e56952, 10 pages. ISSN 1932-6203

Sawaya, Sterling ; Bagshaw, Andrew ; Buschiazzo, Emmanuel ; Kumar, Pankaj ; Chowdhury, Shantanu ; Black, Michael A. ; Gemmell, Neil (2013) Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements PLoS One, 8 (2). Article ID e54710-11 pages. ISSN 1932-6203

Ghosh, Saptaparni ; Kar, Anirban ; Chowdhury, Shantanu ; Dasgupta, Dipak (2013) Ellipticine binds to a human telomere sequence: an additional mode of action as a putative anticancer agent? Biochemistry, 52 (24). pp. 4127-4137. ISSN 0006-2960

Baral, Aradhita ; Kumar, Pankaj ; Pathak, Rajiv ; Chowdhury, Shantanu (2013) Emerging trends in G-quadruplex biology - role in epigenetic and evolutionary events Molecular BioSystems, 9 (7). pp. 1568-1575. ISSN 1742-206X

Yadav, Vinod Kumar ; Kumar, Akinchan ; Mann, Anita ; Aggarwal, Suruchi ; Kuma, Maneesh ; Roy, Sumitabho Deb ; Pore, Subrata Kumar ; Banerjee, Rajkumar ; Kumar, Jerald Mahesh ; Thakur, Ram Krishna ; Chowdhury, Shantanu (2013) Engineered reversal of drug resistance in cancer cells - metastases suppressor factors as change agents Nucleic Acids Research, 42 (2). pp. 764-773. ISSN 0305-1048

Laddha, Saurabh V. ; Nayak, Subhashree ; Paul, Deepanjan ; Reddy, Rajasekhara ; Sharma, Charu ; Jha, Prerana ; Hariharan, Manoj ; Agrawal, Anurag ; Chowdhury, Shantanu ; Sarkar, Chitra ; Mukhopadhyay, Arijit (2013) Genome-wide analysis reveals downregulation of miR-379/miR-656 cluster in human cancers Biology Direct, 8 . Article ID 10, 14 pages. ISSN 1745-6150

Horikoshi, Nobuo ; Kumar, Pankaj ; Sharma, Girdhar G. ; Chen, Min ; Hunt, Clayton R. ; Westover, Kenneth ; Chowdhury, Shantanu ; Pandita, Tej K. (2013) Genome-wide distribution of histone H4 Lysine 16 acetylation sites and their relationship to gene expression Genome Integrity, 4 . Article ID 3, 9 pages. ISSN 2041-9414

Subramaniam, Sangeetha ; Thakur, Ram Krishna ; Yadav, Vinod Kumar ; Nanda, Ranjan ; Chowdhury, Shantanu ; Agrawal, Anurag (2013) Lung cancer biomarkers: state of the art Journal of Carcinogenesis, 12 . Article ID 3. ISSN 0974-6773

Kar, Anirban ; Saha, Dhurjhoti ; Purohit, Gunjan ; Singh, Ankita ; Kumar, Parveen ; Yadav, Vinod Kumar ; Kumar, Pankaj ; Thakur, Ram Krishna ; Chowdhury, Shantanu (2012) Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells Nucleic Acids Research, 40 (6). pp. 2554-2565. ISSN 0305-1048

Beaume, Nicolas ; Pathak, Rajiv ; Yadav, Vinod Kumar ; Kota, Swathi ; Misra, Hari S. ; Gautam, Hemant K. ; Chowdhury, Shantanu (2012) Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation Nucleic Acids Research, 41 (1). pp. 76-89. ISSN 0305-1048

Baral, Aradhita ; Kumar, Pankaj ; Halder, Rashi ; Mani, Prithvi ; Yadav, Vinod Kumar ; Singh, Ankita ; Das, Swapan K. ; Chowdhury, Shantanu (2012) Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals Nucleic Acids Research, 40 (9). pp. 3800-3811. ISSN 0305-1048

Thakur, Ram Krishna ; Yadav, Vinod Kumar ; Kumar, Pankaj ; Chowdhury, Shantanu (2011) Mechanisms of non-metastatic 2 (NME2)-mediated control of metastasis across tumor types Naunyn-Schmiedeberg's Archives of Pharmacology, 384 (4). pp. 397-406. ISSN 0028-1298

Kumar, Pankaj ; Yadav, Vinod Kumar ; Baral, Aradhita ; Kumar, Parveen ; Saha, Dhurjhoti ; Chowdhury, Shantanu (2011) Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide Nucleic Acids Research, 39 (18). pp. 8005-8016. ISSN 0305-1048

Basundra, Richa ; Kumar, Akinchan ; Amrane, Samir ; Verma, Anjali ; Phan, Anh Tuan ; Chowdhury, Shantanu (2010) A novel G-quadruplex motif modulates promoter activity of human thymidine kinase 1 The FEBS Journal, 227 (20). pp. 4254-4264. ISSN 1742-464X

Halder, Rashi ; Halder, Kangkan ; Sharma, Priyanka ; Garg, Gaurav ; Sengupta, Shantanu ; Chowdhury, Shantanu (2010) Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide Molecular BioSystems, 6 (12). pp. 2439-2447. ISSN 1742-206X

Mani, Prithvi ; Yadav, Vinod Kumar ; Das, Swapan Kumar ; Chowdhury, Shantanu (2009) Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination PLoS One, 4 (2). Article ID e4399-9 pages. ISSN 1932-6203

Verma, Anjali ; Yadav, Vinod Kumar ; Basundra, Richa ; Kumar, Akinchan ; Chowdhury, Shantanu (2009) Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells Nucleic Acids Research, 37 (13). pp. 4194-4204. ISSN 0305-1048

Halder, Kangkan ; Halder, Rashi ; Chowdhury, Shantanu (2009) Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals Molecular BioSystems, 5 (12). pp. 1703-1712. ISSN 1742-206X

Thakur, Ram Krishna ; Kumar, Praveen ; Halder, Kangkan ; Verma, Anjali ; Kar, Anirban ; Parent, Jean-Luc ; Basundra, Richa ; Kumar, Akinchan ; Chowdhury, Shantanu (2009) Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression Nucleic Acids Research, 37 (1). pp. 172-183. ISSN 0305-1048

Verma, Anjali ; Halder, Kangkan ; Halder, Rashi ; Yadav, Vinod Kumar ; Rawal, Pooja ; Thakur, Ram Krishna ; Mohd, Farhan ; Sharma, Abhay ; Chowdhury, Shantanu (2008) Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species Journal of Medicinal Chemistry, 51 (18). pp. 5641-5649. ISSN 0022-2623

Yadav, Vinod Kumar ; Abraham, James Kappukalayil ; Mani, Prithvi ; Kulshrestha, Rashi ; Chowdhury, Shantanu (2008) QuadBase: genome-wide database of G4 DNA—occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes Nucleic Acids Research, 36 (S1). D381-D385. ISSN 0305-1048

Halder, Kangkan ; Chowdhury, Shantanu (2007) Quadruplex-coupled kinetics distinguishes ligand binding between G4 DNA motifs Biochemistry, 46 (51). pp. 14762-14770. ISSN 0006-2960

Rawal, Pooja ; Kummarasetti, Veera Bhadra Rao ; Ravindran, Jinoy ; Kumar, Nirmal ; Halder, Kangkan ; Sharma, Rakesh ; Mukerji, Mitali ; Das, Swapan Kumar ; Chowdhury, Shantanu (2006) Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation Genome Research, 16 . pp. 644-655. ISSN 1088-9051

Halder, Kangkan ; Chowdhury, Shantanu (2005) Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: application to G-quadruplex/duplex competition in human c-myc promoter Nucleic Acids Research, 33 (14). pp. 4466-4474. ISSN 0305-1048

Halder, Kangkan ; Mathur, Vidhi ; Chugh, Dipankar ; Verma, Anjali ; Chowdhury, Shantanu (2005) Quadruplex-duplex competition in the nuclease hypersensitive element of human c-myc promoter: C to T mutation in C-rich strand enhances duplex association Biochemical and Biophysical Research Communications, 327 (1). pp. 49-56. ISSN 0006-291X

Kumar, Praveen ; Verma, Anjali ; Maiti, Souvik ; Gargallo, Raimundo ; Chowdhury, Shantanu (2005) Tetraplex DNA transitions within the human c-myc promoter detected by multivariate curve resolution of fluorescence resonance energy transfer Biochemistry, 44 (50). pp. 16426-16434. ISSN 0006-2960

Kamal, Neel ; Chowdhury, Shantanu ; Madan, Taruna ; Sharma, Deepak ; Attreyi, M. ; Haq, Wahajul ; Katti, Seturam Bandacharya ; Kumar, Anil ; Sarma, P. Usha (2005) Tryptophan residue is essential for immunoreactivity of a diagnostically relevant peptide epitope of A. fumigatus Molecular and Cellular Biochemistry, 275 (1). pp. 223-231. ISSN 0300-8177

Mathur, Vidhi ; Verma, Anjali ; Maiti, Souvik ; Chowdhury, Shantanu (2004) Thermodynamics of i-tetraplex formation in the nuclease hypersensitive element of human c-myc promoter Biochemical and Biophysical Research Communications, 320 (4). pp. 1220-1227. ISSN 0006-291X

Maiti, Souvik ; Chaudhury, N. K. ; Chowdhury, Shantanu (2003) Hoechst 33258 binds to G-quadruplex in the promoter region of human c-myc Biochemical and Biophysical Research Communications, 310 (2). pp. 505-512. ISSN 0006-291X

Vlasie, Monica ; Chowdhury, Shantanu ; Banerjee, Ruma (2002) Importance of the histidine ligand to coenzyme B₁₂ in the reaction catalyzed by methylmalonyl-CoA mutase The Journal of Biological Chemistry, 277 (21). pp. 18523-18527. ISSN 0021-9258