Items where Author is "Pal, Debnath"

Sarkar, Lucky ; Oko, Lauren ; Gupta, Soham ; Bubak, Andrew N. ; Das, Bishnu ; Gupta, Parna ; Safiriyu, Abass Alao ; Singhal, Chirag ; Neogi, Ujjwal ; Bloom, David ; Banerjee, Arup ; Mahalingam, Ravi ; Cohrs, Randall J. ; Koval, Michael ; Shindler, Kenneth S. ; Pal, Debnath ; Nagel, Maria ; Sarma, Jayasri Das (2022) Azadirachta indica A. Juss bark extract and its Nimbin isomers restrict β-coronaviral infection and replication Virology, 569 . pp. 13-28. ISSN 0042-6822

Safiriyu, Abass Alao ; Singh, Manmeet ; Kishore, Abhinoy ; Mulchandani, Vaishali ; Maity, Dibyajyoti ; Behera, Amrutamaya ; Sinha, Bidisha ; Pal, Debnath ; Das Sarma, Jayasri (2022) Two Consecutive Prolines in the Fusion Peptide of Murine β-Coronavirus Spike Protein Predominantly Determine Fusogenicity and May Be Essential but Not Sufficient to Cause Demyelination Viruses, 14 (4). p. 834. ISSN 1999-4915

Kundu, Soumya ; Saadi, Fareeha ; Sengupta, Sourodip ; Antony, Gisha Rose ; Raveendran, Vineeth A. ; Kumar, Rahul ; Kamble, Mithila Ashok ; Sarkar, Lucky ; Burrows, Amy ; Pal, Debnath ; Sen, Ganes C. ; Sarma, Jayasri Das (2021) DJ-1-Nrf2 axis is activated upon murine β-coronavirus infection in the CNS Brain Disorders, 4 . p. 100021. ISSN 2666-4593

Singh, Manmeet ; Kishore, Abhinoy ; Maity, Dibyajyoti ; Sunanda, Punnepalli ; Krishnarjuna, Bankala ; Vappala, Sreeparna ; Raghothama, Srinivasarao ; Kenyon, Lawrence C. ; Pal, Debnath ; Das Sarma, Jayasri (2019) A proline insertion-deletion in the spike glycoprotein fusion peptide of mouse hepatitis virus strongly alters neuropathology Journal of Biological Chemistry, 294 (20). pp. 8064-8087. ISSN 0021-9258

Hussain, Afaq ; Das Sarma, Subhajit ; Babu, Swathy ; Pal, Debnath ; Das Sarma, Jayasri (2018) Interaction of arsenic with gap junction protein connexin 43 alters gap junctional intercellular communication Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1865 (10). pp. 1423-1436. ISSN 0167-4889

Das, Rajdeep ; Mitra, Amrita ; Mitra, Gopa ; Maity, Dibyajyoti ; Bhat, Vijay ; Pal, Debnath ; Ross, Cecil ; Kurpad, Anura V. ; Mandal, Amit Kumar (2018) Molecular insights of inhibition in sickle hemoglobin polymerization upon glutathionylation: hydrogen/deuterium exchange mass spectrometry and molecular dynamics simulation-based approach Biochemical Journal, 475 (13). pp. 2153-2166. ISSN 0264-6021

Mitra, Anirban ; Kesarwani, Anil K. ; Pal, Debnath ; Nagaraja, Valakunja (2010) WebGeSTer DB-a transcription terminator database Nucleic Acids Research . ISSN 0305-1048

Tripathi, Pankaj ; Pal, Debnath ; Muniyappa, K. (2007) Saccharomyces cerevisiae Hop1 protein zinc finger motif binds to the Holliday junction and distorts the DNA structure: implications for Holliday junction migration Biochemistry, 46 (44). pp. 12530-12542. ISSN 0006-2960

Bhattacharyya, Rajasri ; Pal, Debnath ; Chakrabarti, Pinak (2004) Disulfide bonds, their stereospecific environment and conservation in protein structures Protein Engineering Design & Selection, 17 (11). pp. 795-808. ISSN 1741-0126

Bhattacharyya, Rajasri ; Pal, Debnath ; Chakrabarti, Pinak (2002) Secondary structures at polypeptide-chain termini and their features Acta Crystallographica Section D, 58 (10-2). pp. 1793-1802. ISSN 0907-4449

Pal, Debnath ; Chakrabarti, Pinak (2002) On residues in the disallowed region of the Ramachandran map Biopolymers, 63 (3). pp. 195-206. ISSN 0006-3525

Praveen, Thoniyot ; Das, Tanya ; Sureshan, Kana M. ; Shashidhar, Mysore S. ; Samanta, Uttamkumar ; Pal, Debnath ; Chakrabarti, Pinak (2002) Silver(I) oxide-silver halide mediated alcoholysis of O-benzoyl-myo-inositol 1,3,5-orthoformates: intramolecular assistance by the sulfonyl group Journal of the Chemical Society, Perkin Transactions 2, 2 (2). pp. 358-365. ISSN 0300-9580

Pal, Debnath ; Chakrabarti, Pinak (2001) Non-hydrogen bond interactions involving the methionine sulfur atom Journal of Biomolecular Structure & Dynamics, 19 (1). pp. 115-128. ISSN 0739-1102

Pal, Debnath ; Mahapatra, Pradip ; Manna, Tapas ; Chakrabarti, Pinak ; Bhattacharyya, Bhabatarak ; Banerjee, Anirban ; Basu, Gautam ; Roy, Siddhartha (2001) Conformational properties of α-tubulin tail peptide: implications for tail-body interaction Biochemistry, 40 (51). pp. 15512-15519. ISSN 0006-2960

Praveen, Thoniyot ; Das, Tanya ; Sureshan, Kana M. ; Shashidhar, Mysore S. ; Samanta, Uttamkumar ; Pal, Debnath ; Chakrabarti, Pinak (2001) Silver(i) oxide–silver halide mediated alcoholysis of O-benzoyl-myo-inositol 1,3,5-orthoformates: intramolecular assistance by the sulfonyl group Journal of Chemical Soceity, Perkin Transactions 2 (2). pp. 358-365. ISSN 1472-779X

Chakrabarti, Pinak ; Pal, Debnath (2001) The interrelationships of side-chain and main-chain conformations in proteins Progress in Biophysics & Molecular Biology, 76 (1-2). pp. 1-102. ISSN 0079-6107

Pal, Debnath ; Chakrabarti, Pinak (2000) Conformational similarity indices between different residues in proteins and α-helix propensities Journal of Biomolecular Structure & Dynamics, 18 (2). pp. 273-280. ISSN 0739-1102

Pal, Debnath ; Chakrabarti, Pinak (2000) Terminal residues in protein chains: residue preference, conformation, and interaction Biopolymers, 53 (6). pp. 467-475. ISSN 0006-3525

Hazra, Braja G. ; Basu, Sourav ; Pore, Vandana S. ; Joshi, Padmakar L. ; Pal, Debnath ; Chakrabarti, Pinak (2000) Synthesis of 11β-(4-dimethylaminophenyl)-17β-hydroxy-17α-(3-methyl-1-butynyl)-4,9-estradien-3-one and 11β-(4-acetophenyl)-17β-hydroxy-17α-(3-methyl-1-butynyl)-4,9-estradien-3-one: two new analogs of mifepristone (RU-486) Steroids, 65 (3). pp. 157-162. ISSN 0039-128X

Samanta, Uttamkumar ; Pal, Debnath ; Chakrabarti, Pinak (2000) Environment of tryptophan side chains in proteins Proteins: Structure, Function, and Bioinformatics, 38 (3). pp. 288-300. ISSN 0887-3585

Pal, Debnath ; Chakrabarti, Pinak (1999) Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations Journal of Molecular Biology, 294 (1). pp. 271-288. ISSN 0022-2836

Pal, Debnath ; Chakrabarti, Pinak (1999) Estimates of the loss of main-chain conformational entropy of different residues on protein folding Proteins: Structure, Function, and Bioinformatics, 36 (3). pp. 332-339. ISSN 0887-3585

Samanta, Uttamkumar ; Pal, Debnath ; Chakrabarti, Pinak (1999) Packing of aromatic rings against tryptophan residues in proteins Acta Crystallographica Section D, 55 (8). pp. 1421-1427. ISSN 0907-4449

Pal, Debnath ; Chakrabarti, Pinak (1999) Graphical representation of the salient conformational features of protein residues Protein Engineering, 12 (7). pp. 523-526. ISSN 0269-2139

Pal, Debnath ; Chakrabarti, Pinak (1998) Different types of interactions involving cysteine sulfhydryl group in proteins Journal of Biomolecular Structure & Dynamics, 15 (6). pp. 1059-1072. ISSN 0739-1102

Chakrabarti, P. ; Pal, Debnath (1998) Main-chain conformational features at different conformations of the side-chains in proteins Protein Engineering, 11 (8). pp. 631-647. ISSN 0269-2139

Surange, Sheetal S. ; Kumaran, Govindaraj ; Rajappa, Srinivasachari ; Pal, Debnath ; Chakrabarti, Pinak (1997) Push-pull butadienes: evidence for a possible C-H…S hydrogen bond in 4-(methylthio)-4-nitro-1-(pyrrolidin-1-yl)buta-1,3-diene Helvetica Chimica Acta, 80 (8). pp. 2329-2336. ISSN 0018-019X

Chakrabarti, Pinak ; Pal, Debnath (1997) An electrophile-nucleophile interaction in metalloprotein structures Protein Science, 6 (4). pp. 851-859. ISSN 0961-8368

Sur, Surojit ; Ganesh, Sambasivam ; Pal, Debnath ; Puranik, Vedavati G. ; Chakrabarti, Pinak ; Sarkar, Amitabha (1996) Stereodivergent C-C bond formation on arene-chromium template: endo-selective allylation by Hosomi-Sakurai reaction Journal of Organic Chemistry, 61 (24). pp. 8362-8363. ISSN 0022-3263