Helix and hairpin nucleation in short peptides using centrally positioned conformationally constrained dipeptide segments

Chandrappa, Siddappa ; Aravinda, Subrayashastry ; Raghothama, Srinivasarao ; Sonti, Rajesh ; Rai, Rajkishor ; Harini, Veldore V. ; Shamala, Narayanaswamy ; Balaram, Padmanabhan (2012) Helix and hairpin nucleation in short peptides using centrally positioned conformationally constrained dipeptide segments Organic and Biomolecular Chemistry, 10 . pp. 2815-2823. ISSN 1477-0520

[img]
Preview
PDF - Publisher Version
2MB

Official URL: http://pubs.rsc.org/en/content/articlelanding/2012...

Related URL: http://dx.doi.org/10.1039/C2OB06817F

Abstract

The effect of incorporation of a centrally positioned Ac6c-Xxx segment where Xxx = LVal/DVal into a host oligopeptide composed of L-amino acid residues has been investigated. Studies of four designed octapeptides Boc-Leu-Phe-Val-Ac6c-Xxx-Leu-Phe-Val-OMe (Xxx = DVal 1, LVal 2) Boc-Leu-Val-Val-Ac6c-Xxx-Leu-Val-Val-OMe (Xxx = DVal 3, LVal 4) are reported. Diagnostic nuclear Overhouse effects characteristic of hairpin conformations are observed for Xxx = DVal peptides (1 and 3) while continuous helical conformation characterized by sequential NiH #8596; Ni+1H NOEs are favored for Xxx = LVal peptides (2 and 4) in methanol solutions. Temperature co-efficient of NH chemical shifts are in agreement with distinctly different conformational preferences upon changing the configuration of the residue at position 5. Crystal structures of peptides 2 and 4 (Xxx = LVal) establish helical conformations in the solid state, in agreement with the structures deduced from NMR data. The results support the design principle that centrally positioned type I β-turns may be used to nucleate helices in short peptides, while type I' β-turns can facilitate folding into β-hairpins.

Item Type:Article
Source:Copyright of this article belongs to Royal Society of Chemistry.
ID Code:91424
Deposited On:21 May 2012 13:00
Last Modified:19 May 2016 05:14

Repository Staff Only: item control page