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Naqvi, Afsar Raza ; Sarwat, Maryam ; Pradhan, Bhubaneswar ; Choudhury, Nirupam Roy ; Rizwanul Haq, Qazi Mohd ; Mukherjee, Sunil Kumar (2011) Differential expression analyses of host genes involved in systemic infection of Tomato leaf curl New Delhi virus (ToLCNDV) Virus Research, 160 (1-2). pp. 395-399. ISSN 0168-1702

Pratap, Dharmendra ; Kashikar, Ashwin R. ; Mukherjee, Sunil K. (2011) Molecular characterization and infectivity of a Tomato leaf curl New Delhi virus variant associated with newly emerging yellow mosaic disease of eggplant in India Journal of Virology, 8 . 305_1-305_13. ISSN 0022-538X

Rouhibakhsh, A. ; Choudhury, N. R. ; Mukherjee, S. K. ; Malathi, V. G. (2011) Enhanced nicking activity of Rep in presence of pre-coat protein of Mungbean yellow mosaic India virus Virus Genes, 44 (2). pp. 356-361. ISSN 0920-8569

Kaliappan, Kosalai ; Choudhury, Nirupam Roy ; Suyal, Geetika ; Mukherjee, Sunil Kumar (2011) A novel role for RAD54: this host protein modulates geminiviral DNA replication The FASEB Journal . ISSN 0892-6638

Zaffalon, Valerio ; Mukherjee, Sunil Kumar ; Reddy, Vanga Siva ; Thompson, Jeremy R. ; Tepfer, Mark (2011) A survey of geminiviruses and associated satellite DNAs in the cotton-growing areas of Northwestern India Archives of Virology . ISSN 0304-8608

Pandey, Prerna ; Mukhopadhya, Subhra ; Naqvi, Afsar R. ; Mukherjee, Sunil K. ; Shekhawat, Gyan S. ; Choudhury, Nirupam R. (2010) Molecular characterization of two distinct monopartite Begomoviruses infecting tomato in India Journal of Virology, 7 . 337_1-337_10. ISSN 0022-538X

Naqvi, Afsar R. ; Haq, Qazi M. R. ; Mukherjee, Sunil K. (2010) MicroRNA profiling of tomato leaf curl new Delhi virus (ToLCNDV) infected tomato leaves indicates that deregulation of mir159/319 and mir172 might be linked with leaf curl disease Journal of Virology, 7 . 281_1-281_16. ISSN 0022-538X

Karjee, Sumona ; Minhas, Ankita ; Sood, Vikas ; Ponia, Sanket S. ; Banerjea, Akhil C. ; Chow, Vincent T. K. ; Mukherjee, Sunil K. ; Lal, Sunil K. (2010) The 7a accessory protein of severe acute respiratory syndrome coronavirus acts as an RNA silencing suppressor Journal of Virology, 84 (19). pp. 10395-10401. ISSN 0022-538X

Naqvi, Afsar Raza ; Choudhury, Nirupam Roy ; Mukherjee, Sunil Kumar ; Haq, Qazi Mohd. Rizwanul (2010) In silico analysis reveals that several tomato microRNA/microRNA∗ sequences exhibit propensity to bind to tomato leaf curl virus (ToLCV) associated genomes and most of their encoded open reading frames (ORFs) Plant Physiology and Biochemistry . ISSN 0981-9428

Singh, Gatikrushna ; Korde, Reshma ; Malhotra, Pawan ; Mukherjee, Sunil ; Bhatnagar, Raj K. (2010) Systematic deletion and site-directed mutagenesis of FHVB2 establish the role of C-terminal amino acid residues in RNAi suppression Biochemical and Biophysical Research Communications, 398 (2). pp. 290-295. ISSN 0006-291X

Yadava, Pranjal ; Suyal, Geetika ; Mukherjee, Sunil Kumar (2010) Begomovirus DNA replication and pathogenicity Current Science, 98 (3). pp. 360-368. ISSN 0011-3891

Pasumarthy, Kalyan K. ; Choudhury, Nirupam R. ; Mukherjee, Sunil K. (2010) Tomato leaf curl Kerala virus (ToLCKeV) AC3 protein forms a higher order oligomer and enhances ATPase activity of replication initiator protein (Rep/AC1) Journal of Virology, 7 . 128_1-128_8. ISSN 0022-538X

Pandey, Prerna ; Choudhury, Nirupam R. ; Mukherjee, Sunil K. (2009) A geminiviral amplicon (VA) derived from Tomato leaf curl virus (ToLCV) can replicate in a wide variety of plant species and also acts as a VIGS vector Journal of Virology, 6 (152). 152_1-152_13. ISSN 0022-538X

Singh, Gatikrushna ; Popli, Sonam ; Hari, Yukti ; Malhotra, Pawan ; Mukherjee, Sunil ; Bhatnagar, Raj K. (2009) Suppression of RNA silencing by Flock house virus B2 protein is mediated through its interaction with the PAZ domain of Dicer The FASEB Journal, 23 (6). pp. 1845-1857. ISSN 0892-6638

Singh, Dharmendra Kumar ; Malik, Punjab Singh ; Choudhury, Nirupam Roy ; Mukherjee, Sunil Kumar (2008) MYMIV replication initiator protein (Rep): Roles at the initiation and elongation steps of MYMIV DNA replication Virology, 380 (1). pp. 75-83. ISSN 0042-6822

Teotia, Preeti Singh ; Mukherjee, Sunil Kumar ; Mishra, Neeti Sanan (2008) Fine tuning of auxin signaling by miRNAs Physiology and Molecular Biology of Plants, 14 (1-2). pp. 81-90. ISSN 0971-5894

Naqvi, Afsar Raza ; Choudhury, Nirupam Roy ; Rizwanul Haq, Qazi Mohd. ; Mukherjee, Sunil Kumar (2008) MicroRNAs as biomarkers in tomato leaf curl virus (ToLCV) disease Nucleic Acids Symposium Series, 52 (1). pp. 507-508. ISSN 0261-3166

Roy, Sujit ; Choudhury, Swarup Roy ; Mukherjee, Sunil K. ; Sengupta, Dibyendu N. (2007) Tobacco proliferating cell nuclear antigen binds directly and stimulates both activity and processivity of ddNTP-sensitive mungbean DNA polymerase Archives of Biochemistry and Biophysics, 468 (1). pp. 22-31. ISSN 0003-9861

Chilakamarthi, Ushasri ; Mukherjee, Sunil K. ; Deb, J. K. (2007) Intervention of geminiviral replication in yeast by ribozyme mediated downregulation of its Rep protein FEBS Letters, 581 (14). pp. 2675-2683. ISSN 0014-5793

Singh, Dharmendra Kumar ; Islam, Mohammad Nurul ; Choudhury, Nirupam Roy ; Karjee, Sumona ; Mukherjee, Sunil Kumar (2007) The 32 kDa subunit of replication protein A (RPA) participates in the DNA replication of Mung bean yellow mosaic India virus (MYMIV) by interacting with the viral Rep protein Nucleic Acids Research, 35 (3). pp. 755-770. ISSN 0305-1048

Singh, Dharmendra K. ; Karjee, Sumona ; Malik, Punjab S. ; Islam, Nurul ; Mukherjee, Sunil K. (2007) DNA replication and Pathogenecity of MYMIV Communicating Current Research Trends in Applied Microbiology . pp. 155-162.

Mishra, Neeti Sanan ; Mukherjee, Sunil Kumar (2007) A peep into the Plant miRNA world Open Plant Science Journal, 1 . pp. 1-9. ISSN 1874-2947

Choudhury, Nirupam Roy ; Malik, Punjab Singh ; Singh, Dharmendra Kumar ; Islam, Mohammad Nurul ; Kaliappan, Kosalai ; Mukherjee, Sunil Kumar (2006) The oligomeric Rep protein of Mungbean yellow mosaic India virus (MYMIV) is a likely replicative helicase Nucleic Acids Research, 34 (21). pp. 6362-6377. ISSN 0305-1048

Malik, Punjab Singh ; Kumar, Vikash ; Bagewadi, Basavaraj ; Mukherjee, Sunil K. (2005) Interaction between coat protein and replication initiation protein of Mung bean yellow mosaic India virus might lead to control of viral DNA replication Virology, 337 (2). pp. 273-283. ISSN 0042-6822

El-Kafafi, El-Sayed ; Mukherjee, Sunil ; El-Shami, Mahmoud ; Putaux, Jean-Luc ; Block, Maryse A. ; Pignot-Paintrand, Isabelle ; Lerbs-Mache, Silva ; Falconet, Denis (2005) The plastid division proteins, FtsZ1 and FtsZ2, differ in their biochemical properties and sub-plastidial localization Biochemical Journal, 387 (3). pp. 669-676. ISSN 0006-2936

Bagewadi, Basavaraj ; Chen, Shoajiang ; Lal, Sunil K. ; Choudhury, Nirupam Roy ; Mukherjee, Sunil K. (2004) PCNA interacts with Indian mung bean yellow mosaic virus Rep and downregulates Rep activity Journal of Virology, 78 (21). pp. 11890-11903. ISSN 0022-538X

Raghavan, Vineetha ; Malik, Punjab S. ; Choudhury, Nirupam Roy ; Mukherjee, Sunil K. (2004) The DNA-A component of a plant geminivirus (Indian mung bean yellow mosaic virus) replicates in budding yeast cells Journal of Virology, 78 (5). pp. 2405-2413. ISSN 0022-538X

Agrawal, Neema ; Dasaradhi, P. V. N. ; Mohmmed, Asif ; Malhotra, Pawan ; Bhatnagar, Raj K. ; Mukherjee, Sunil K. (2003) RNA interference: Biology, mechanism, and applications Microbiology and Molecular Biology Reviews, 67 (4). pp. 657-685.

Gaikwad, A. ; Hop, D. ; Mukherjee, S. (2002) A 70-kDa chloroplast DNA polymerase from pea (Pisum sativum) that shows high processivity and displays moderate fidelity Molecular Genetics and Genomics, 267 (1). pp. 45-56. ISSN 1617-4615

Pant, V. ; Gupta, D. ; Roy Choudhury, N. ; Malathi, V. G. ; Varma, A. ; Mukherjee, S. K. (2001) Molecular characterization of the Rep protein of the blackgram isolate of Indian mungbean yellow mosaic virus Journal of General Virology, 82 (10). pp. 2559-2567. ISSN 0022-1317

Gaikwad, A. ; Van Hop, D. ; Mukherjee, S. K. (2000) Carboxy terminal region of a chloroplast DNA polymerase accessory factor stimulates DNA polymerase activity Indian Journal of Biochemistry & Biophysics, 37 (6). pp. 424-432. ISSN 0301-1208

Gaikwad, A. ; Babbarwal, V. ; Pant, V. ; Mukherjee, S. K. (2000) Pea chloroplast FtsZ can form multimers and correct the thermosensitive defect of an Escherichia coli ftsZ mutant Molecular Genetics and Genomics, 263 (2). pp. 213-221. ISSN 1617-4615

Hop, Duong Van ; Gaikwad, Amos ; Yadav, Badam Singh ; Reddy, Malireddy Kodandarami ; Sopory, Sudhir ; Mukherjee, Sunil Kumar (1999) Suppression of pea nuclear topoisomerase I enzyme activity by pea PCNA Plant Journal, The, 19 (2). pp. 153-162. ISSN 0960-7412

Amos, Gaikwad ; Tewari, Krishna K. ; Kumar, Dhirendra ; Weiliang, Chen ; Mukherjee, Sunil Kumar (1999) Isolation and characterisation of the cDNA encoding a glycosylated accessory protein of pea chloroplast DNA polymerase Nucleic Acids Research, 27 (15). pp. 3120-3129. ISSN 0305-1048

Chen, Weiliang ; Gaikwad, Amos ; Mukherjee, Sunil Kumar ; Choudhary, Nirupam Roy ; Kumar, Dhirendra ; Tewari, Krishna K. (1996) A 43 kDa DNA binding protein from the Pea chloroplast interacts with and stimulates the cognate DNA polymerase Nucleic Acids Research, 24 (20). pp. 3953-3961. ISSN 0305-1048

Kumar, D. ; Mukherjee, S. ; Reddy, M. K. ; Tewari, K. K. (1995) A novel single-stranded DNA-specific endonuclease from pea chloroplasts Journal of Experimental Botany, 46 (7). pp. 767-776. ISSN 0022-0957

Reddy, Malireddy K. ; Choudhury, Nirupam Roy ; Kumar, Dhirendra ; Mukherjee, Sunil K. ; Tewari, K. K. (1994) Characterisation and mode of in vitro replication of pea chloroplast OriA sequences European Journal of Biochemistry, 220 (3). pp. 933-941. ISSN 0014-2956

Mukherjee, S. K. ; Reddy, M. K. ; Kumar, D. ; Tewari, K. K. (1994) Purification and characterization of a eukaryotic type 1 topoisomerase from pea chloroplast Journal of Biological Chemistry, 269 . pp. 3793-3801. ISSN 0021-9258

Santra, C. R. ; Mukherjee, S. K. ; Thakur, A. R. (1993) Denatured supercoiled DNA-structural and biological activity Indian Journal of Biochemistry & Biophysics, 30 (5). pp. 252-256. ISSN 0301-1208

Miron, Alexander ; Mukherjee, Sunil ; Bastia, Deepak (1992) Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance EMBO Journal, 11 (3). pp. 1205-1216. ISSN 0261-4189

Sista, P. R. ; Mukherjee, S. ; Patel, P. ; Khatri, G. S. ; Bastia, D. (1989) A host-encoded DNA-binding protein promotes termination of plasmid replication at a sequence-specific replication terminus PNAS, 86 (9). pp. 3026-3030. ISSN 0027-8424

Mukherjee, S. ; Erickson, H. ; Bastia, D. (1988) Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNA PNAS, 85 (17). pp. 6287-6291. ISSN 0027-8424

Mukherjee, Sunil ; Erickson, Harold ; Bastia, Deepak (1988) Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein Cell, 52 (3). pp. 375-383. ISSN 0092-8674

Mukherjee, Sunil ; Patel, Indravadan ; Bastia, Deepak (1985) Conformational changes in a replication origin induced by an initiator protein Cell, 43 (1). pp. 189-197. ISSN 0092-8674

Mukherjee, Sunil ; Chaudhuri, U. ; Poddar, R. K. (1983) Differential survival and chloramphenicol-insensitive error-prone repair of hydroxylamine-inactivated θX174 bacteriophage mutants Mutation Research/DNA Repair Reports, 112 (3). pp. 129-137. ISSN 0167-8817

Mukherjee, Sunil ; Sarkar, Saumyendra Nath ; Raychaudhuri, Probhas ; Mazumdar, Sunil Kumar (1983) Propagation of elastic waves in DNA International Journal of Mathematics and Mathematical Sciences, 6 (4). pp. 767-781. ISSN 0161-1712

Mukherjee, Sunil K. ; Poddar, Ramendra K. (1980) Evidence for chloramphenicol-insensitive recA⁺-dependent single-stranded DNA repair Mutation Research: Fundamental and Molecular Mechanisms of Mutagenesis, 72 (1). pp. 161-164. ISSN 1386-1964