Browse by Fellow

Permina, Elizaveta A. ; Medvedeva, Yulia A. ; Baeck, Pia M. ; Hegde, Shubhada R. ; Mande, Shekhar C. ; Makeev, Vsevolod J. (2012) Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets Journal of Biomolecular Structure and Dynamics . p. 1. ISSN 0739-1102

Hegde, Shubhada R. ; Rajasingh, Hannah ; Das, Chandrani ; Mande, Sharmila S. ; Mande, Shekhar C. (2012) Understanding communication signals during mycobacterial latency through predicted genome-wide protein interactions and boolean modeling PLoS One, 7 (3). e33893. ISSN 1932-6203

Arora, Ashish ; Chandra, Nagasuma R. ; Das, Amit ; Gopal, Balasubramanian ; Mande, Shekhar C. ; Prakash, Balaji ; Ramachandran, Ravishankar ; Sankaranarayanan, Rajan ; Sekar, K. ; Tyagi, Anil K. (2011) Structural biology of Mycobacterium tuberculosis proteins: the Indian efforts Tuberculosis, 91 (5). pp. 456-468. ISSN 1472-9792

Jailkhani, Noor ; Ravichandran, Srikanth ; Hegde, Shubhada R. ; Siddiqui, Zaved ; Mande, Shekhar C. ; Rao, Kanury V. S. (2011) Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network Genome Research . ISSN 1088-9051

Santosh Kumar, C. M. ; Mande, Shekhar C. (2011) Protein chaperones and non-protein substrates: on substrate promiscuity of GroEL Current Science, 100 (11). pp. 1646-1653. ISSN 0011-3891

Kumar, Pramod ; Joshi, Dhananjay C. ; Akif, Mohd. ; Akhter, Yusuf ; Hasnain, Seyed E. ; Mande, Shekhar C. (2010) Mapping conformational transitions in cyclic AMP receptor protein: crystal structure and normal-mode analysis of Mycobacterium tuberculosis apo-cAMP receptor protein Biophysical Journal, 98 (2). pp. 305-314. ISSN 0006-3495

Nair, Shiny ; Ramaswamy, Poongothai A. ; Ghosh, Sudip ; Joshi, Dhananjay C. ; Pathak, Niteen ; Siddiqui, Imran ; Sharma, Pawan ; Hasnain, Seyed E. ; Mande, Shekhar C. ; Mukhopadhyay, Sangita (2009) The PPE18 of Mycobacterium tuberculosis interacts with TLR2 and activates IL-10 induction in macrophage The Journal of Immunology, 183 (10). pp. 6269-6281. ISSN 0022-1767

Kumar, Santosh C. M. ; Khare, Garima ; Srikanth, C. V. ; Tyagi, Anil K. ; Sardesai, Abhijit A. ; Mande, Shekhar C. (2009) Facilitated oligomerization of mycobacterial GroEL: evidence for phosphorylation-mediated oligomerization Journal of Bacteriology, 191 (21). pp. 6525-6538. ISSN 0021-9193

Basu, D. ; Khare, G. ; Singh, S. ; Tyagi, A. ; Khosla, S. ; Mande, S. C. (2009) A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL Nucleic Acids Research, 37 (15). pp. 4944-4954. ISSN 0305-1048

Manimaran, P. ; Hegde, Shubhada R. ; Mande, Shekhar C. (2009) Prediction of conditional gene essentiality through graph theoretical analysis of genome-wide functional linkages Molecular Biosystems, 9 (12). pp. 1936-1942. ISSN 1742-206X

Hegde, Shubhada R. ; Manimaran, Palanisamy ; Mande, Shekhar C. (2008) Dynamic changes in protein functional linkage networks revealed by integration with gene expression data PLoS Computational Biology, 4 (11). e1000237. ISSN 1553-734X

Akif, Mohd ; Khare, Garima ; Tyagi, Anil K. ; Mande, Shekhar C. ; Sardesai, Abhijit A. (2008) Functional studies of multiple thioredoxins from Mycobacterium tuberculosis Journal of Bacteriology, 190 (21). pp. 7087-7095. ISSN 0021-9193

Khan, Nooruddin ; Alam, Kaiser ; Mande, Shekhar C. ; Valluri, Vijaya Lakshmi ; Hasnain, Seyed E. ; Mukhopadhyay, Sangita (2008) Mycobacterium tuberculosis heat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages Cellular Microbiology, 10 (8). pp. 1711-1722. ISSN 1462-5814

Yellaboina, Sailu ; Goyal, Kshama ; Mande, Shekhar C. (2007) Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data Genome Research, 17 (4). pp. 527-535. ISSN 1088-9051

Qamra, Rohini ; Prakash, Prachee ; Aruna, Bandi ; Hasnain, Seyed E. ; Mande, Shekhar C. (2006) The 2.15 Å crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication and suggests a role in host-pathogen interactions Biochemistry, 45 (23). pp. 6997-7005. ISSN 0006-2960

Vijayakrishnan, Swetha ; Qamra, Rohini ; Verma, Chandra S. ; Sen, Ranjan ; Mande, Shekhar C. (2006) Cation-mediated interplay of loops in chaperonin-10 Journal of Biomolecular Structure & Dynamics, 23 (4). pp. 365-376. ISSN 0739-1102

Akif, M. ; Akhter, Y. ; Hasnain, S. E. ; Mande, S. C. (2006) Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis CRP/FNR family transcription regulator Acta Crystallographica Section F, F62 . pp. 873-875. ISSN 1744-3091

Qamra, R. ; Prakash, P. ; Aruna, B. ; Hasnain, S. E. ; Mande, S. C. (2005) Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis chorismate mutase Acta Crystallographica Section F, 61 . pp. 473-475. ISSN 1744-3091

Terwilliger, T. C. ; Park, M. S. ; Waldo, G. S. ; Berendzen, J. ; Hung, L.-W. ; Kim, C.-Y. ; Smith, C. V. ; Sacchettini, J. C. ; Bellinzoni, M. ; Bossi, R. ; De Rossi, E. ; Mattevi, A. ; Milano, A. ; Riccardi, G. ; Rizzi, M. ; Roberts, M. M. ; Coker, A. R. ; Fossati, G. ; Mascagni, P. ; Coates, A. R. M. ; Wood, S. P. ; Goulding, C. W. ; Apostol, M. I. ; Anderson, D. H. ; Gill, H. S. ; Eisenberg, D. S. ; Taneja, B. ; Mande, S. ; Pohl, E. ; Lamzin, V. ; Tucker, P. ; Wilmanns, M. ; Colovos, C. ; Meyer-Klaucke, W. ; Munro, A. W. ; McLean, K. J. ; Marshall, K. R. ; Leys, D. ; Yang, J. K. ; Yoon, H.-J. ; Lee, B. I. ; Lee, M. G. ; Kwak, J. E. ; Han, B. W. ; Lee, J. Y. ; Baek, S.-H. ; Suh, S. W. ; Komen, M. M. ; Arcus, V. L. ; Baker, E. N. ; Lott, J. S. ; Jacobs, W. ; Alber, T. ; Rupp, B. (2003) The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology Tuberculosis, 83 (4). pp. 223-249. ISSN 1472-9792

Aruna, Battu ; Ghosh, Sudip ; Singh, Anil K. ; Mande, Shekhar C. ; Srinivas, V. ; Chauhan, Radha ; Ehtesham, Nasreen Z. (2003) Human recombinant resistin protein displays a tendency to aggregate by forming intermolecular disulfide linkages Biochemistry, 42 (36). pp. 10554-10559. ISSN 0006-2960

Goulding, C. W. ; Apostol, M. ; Anderson, D. H. ; Gill, H. S. ; Smith, C. V. ; Kuo, M. R. ; Yang, J. Kuk ; Waldo, G. S. ; Suh, S. Won ; Chauhan, R. ; Kale, A. ; Bachhawat, N. ; Mande, S. C. ; Johnston, J. M. ; Lott, J. Shaun ; Baker, E. N. ; Arcus, V. L. ; Leys, D. ; McLean, K. J. ; Munro, A. W. ; Berendzen, J. ; Sharma, V. ; Park, M. S. ; Eisenberg, D. ; Sacchettini, J. ; Alber, T. ; Rupp, B. ; Jacobs, W. ; Terwilliger, T. C. (2002) The TB structural genomics consortium: providing a structural foundation for drug discovery Current Drug Targets - Infectious Disorders, 2 (2). pp. 121-141. ISSN 1568-0053

Taneja, B. ; Mande, S. C. (2002) Structure of Mycobacterium tuberculosis chaperonin-10 at 3.5 Å resolution Acta Crystallographica Section D, 58 (2). pp. 260-266. ISSN 0907-4449

Kaur, Ramandeep ; Pathania, Ranjana ; Sharma, Vishwamitra ; Mande, Shekhar C. ; Dikshit, Kanak L. (2002) Chimeric Vitreoscilla hemoglobin (VHb) carrying a flavoreductase domain relieves nitrosative stress in Escherichia coli: new insight into the functional role of VHb Applied and Environmental Microbiology, 68 (1). pp. 152-160. ISSN 0099-2240

Rajamohan, Govindan ; Dahiya, Monika ; Mande, Shekhar C. ; Dikshit, Kanak L. (2002) Function of the 90-loop (Thr⁹⁰-Glu¹⁰⁰) region of staphylokinase in plasminogen activation probed through site-directed mutagenesis and loop deletion Biochemical Journal, 365 . pp. 379-389. ISSN 0006-2936

Chauhan, Radha ; Mande, Shekhar C. (2002) Site-directed mutagenesis reveals a novel catalytic mechanism of Mycobacterium tuberculosis alkylhydroperoxidase C Biochemical Journal, 367 (1). pp. 255-261. ISSN 0006-2936

Taneja, Bhupesh ; Mande, Shekhar C. (2001) Three-dimensional structure of Mycobacterium tuberculosis chaperonin-10 reveals a partially stable conformation of its mobile loop Current Science, 81 (1). pp. 87-91. ISSN 0011-3891

Chauhan, Radha ; Mande, Shekhar C. (2001) Characterization of the Mycobacterium tuberculosis H37Rv alkyl hydroperoxidase AhpC points to the importance of ionic interactions in oligomerization and activity Biochemical Journal, 354 . pp. 209-215. ISSN 0006-2936

Mande, Sharmila S. ; Gupta, Naveen ; Ghosh, Amit ; Mande, Shekhar C. (2000) Homology model of a novel xylanase: molecular basis for high-thermostability and alkaline stability Journal of Biomolecular Structure & Dynamics, 18 (1). pp. 137-144. ISSN 0739-1102

Bachhawat, Nandita ; Mande, Shekkar C. (2000) Complex evolution of the inositol-1-phosphate synthase gene among archaea and eubacteria Trends in Genetics, 16 (3). pp. 111-113. ISSN 0168-9525

Joshi, Meenal ; Mande, Shekhar ; Dikshit, Kanak L. (1998) Hemoglobin biosynthesis in Vitreoscilla stercoraria DW: cloning, expression, and characterization of a new homolog of a bacterial globin gene Applied and Environmental Microbiology, 64 (6). pp. 2220-2228. ISSN 0099-2240

Banerjee, Sanjiban K. ; Misra, Parimal ; Bhatt, Kamlesh ; Mande, Shekhar C. ; Chakraborti, Pradip K. (1998) Identification of an ABC transporter gene that exhibits mRNA level overexpression in fluoroquinolone-resistant Mycobacterium smegmatis FEBS Letters, 425 (1). pp. 151-156. ISSN 0014-5793

Mainfroid, Véronique ; Mande, Shekhar C. ; Hol, Wim G. J. ; Martial, Joseph A. ; Goraj, Karine (1996) Stabilization of human triosephosphate isomerase by improvement of the stability of individual α-Helices in dimeric as well as monomeric forms of the protein Biochemistry, 35 (13). pp. 4110-4117. ISSN 0006-2960

Banerjee, R. ; Mande, S. C. ; Ganesh, V. ; Das, K. ; Dhanaraj, V. ; Mahanta, S. K. ; Suguna, K. ; Surolia, A. ; Vijayan, M. (1994) Crystal structure of peanut lectin, a protein with an unusual quaternary structure PNAS, 91 (1). pp. 227-231. ISSN 0027-8424

Banerjee, R. ; Mande, S. C. ; Ganesh, V. ; Das, K. ; Dhanaraj, V. ; Mahanta, S. K. ; Suguna, K. ; Surolia, A. ; Vijayan, M. (1993) Crystal structure of peanut lectin, a protein with an open quaternary arrangement Acta Crystallographica Section A, 49 (Suppl.). c95-c95. ISSN 0108-7673

Rentier-Delrue, Françoise ; Mande, Shekhar C. ; Moyens, Sylvianne ; Terpstra, Peter ; Mainfroid, Véronique ; Goraj, Karine ; Lion, Michelle ; Hol, Wim G. J. ; Martial, Joseph A. (1993) Cloning and overexpression of the triosephosphate isomerase genes from psychrophilic and thermophilic bacteria: structural comparison of the predicted protein seqiences Journal of Molecular Biology, 229 (1). pp. 85-93. ISSN 0022-2836

Mande, S. C. ; Suguna, K. (1989) A fast algorithm for macromolecular packing calculations Journal of Applied Crystallography, 22 (6). pp. 627-629. ISSN 0021-8898

Mande, S. C. ; Raghunathan, S. ; Islam Khan, M. ; Surolia, A. ; Vijayan, M. (1987) Structural similarity between peanut lectin and concanavalin A Acta Crystallographica Section A, 43 . C21-C21. ISSN 0108-7673

Salunke, D. M. ; Swamy, M. J. ; Khan, M. I. ; Mande, S. C. ; Surolia, A. ; Vijayan, M. (1985) Arrangement of subunits in peanut lectin. Rotation function and chemical cross-linking studies Journal of Biological Chemistry, 260 . pp. 13576-13579. ISSN 0021-9258