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Khandal, Hitaishi ; Singh, Amar Pal ; Chattopadhyay, Debasis (2020) The MicroRNA397b-LACCASE2 Module Regulates Root Lignification under Water and Phosphate Deficiency Plant Physiology, 182 (3). pp. 1387-1403. ISSN 0032-0889

Khandal, Hitaishi ; Gupta, Santosh Kumar ; Dwivedi, Vikas ; Mandal, Drishti ; Sharma, Nilesh Kumar ; Vishwakarma, Niraj Kumar ; Pal, Lalita ; Choudhary, Megha ; Francis, Aleena ; Malakar, Paheli ; Singh, Nagendra Pratap ; Sharma, Kapil ; Sinharoy, Senjuti ; Singh, Narendra Pratap ; Sharma, Rameshwar ; Chattopadhyay, Debasis (2020) Root‐specific expression of chickpea cytokinin oxidase/dehydrogenase 6 leads to enhanced root growth, drought tolerance and yield without compromising nodulation Plant Biotechnology Journal, 18 (11). pp. 2225-2240. ISSN 1467-7644

Kumar Meena, Mukesh ; Kumar Vishwakarma, Niraj ; Tripathi, Vineeta ; Chattopadhyay, Debasis (2018) CBL-interacting protein kinase 25 contributes to root meristem development Journal of Experimental Botany, 70 (1). pp. 133-147. ISSN 0022-0957

Sardar, Atish ; Nandi, Ashis Kumar ; Chattopadhyay, Debasis (2017) CBL-interacting protein kinase 6 negatively regulates immune response to Pseudomonas syringae in Arabidopsis Journal of Experimental Botany, 68 (13). pp. 3573-3584. ISSN 0022-0957

Sahu, Kamlesh Kumar ; Chattopadhyay, Debasis (2017) Genome-wide sequence variations between wild and cultivated tomato species revisited by whole genome sequence mapping BMC Genomics, 18 (1). ISSN 1471-2164

Khandal, Hitaishi ; Parween, Sabiha ; Roy, Riti ; Meena, Mukesh Kumar ; Chattopadhyay, Debasis (2017) MicroRNA profiling provides insights into post-transcriptional regulation of gene expression in chickpea root apex under salinity and water deficiency Scientific Reports, 7 (1). ISSN 2045-2322

Dwivedi, Vikas ; Parida, Swarup Kumar ; Chattopadhyay, Debasis (2017) A repeat length variation in myo-inositol monophosphatase gene contributes to seed size trait in chickpea Scientific Reports, 7 (1). ISSN 2045-2322

Jain, Deepti ; Khandal, Hitaishi ; Khurana, Jitendra Paul ; Chattopadhyay, Debasis (2016) A pathogenesis related-10 protein CaARP functions as aldo/keto reductase to scavenge cytotoxic aldehydes Plant Molecular Biology, 90 (1). pp. 171-187. ISSN 0167-4412

Gupta, Sonal ; Nawaz, Kashif ; Parween, Sabiha ; Roy, Riti ; Sahu, Kamlesh ; Kumar Pole, Anil ; Khandal, Hitaishi ; Srivastava, Rishi ; Kumar Parida, Swarup ; Chattopadhyay, Debasis (2016) Draft genome sequence ofCicer reticulatumL., the wild progenitor of chickpea provides a resource for agronomic trait improvement DNA Research . dsw042. ISSN 1340-2838

Verma, Sandhya ; Gazara, Rajesh Kumar ; Nizam, Shadab ; Parween, Sabiha ; Chattopadhyay, Debasis ; Verma, Praveen Kumar (2016) Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta rabiei provides insight into the necrotrophic effector repertoire Scientific Reports, 6 (1). ISSN 2045-2322

Meena, Mukesh K. ; Ghawana, Sanjay ; Dwivedi, Vikas ; Roy, Ansuman ; Chattopadhyay, Debasis (2015) Expression of chickpea CIPK25 enhances root growth and tolerance to dehydration and salt stress in transgenic tobacco Frontiers in Plant Science, 6 . No pp. given. ISSN 1664-462X

Gaur, Rashmi ; Jeena, Ganga ; Shah, Niraj ; Gupta, Shefali ; Pradhan, Seema ; Tyagi, Akhilesh K. ; Jain, Mukesh ; Chattopadhyay, Debasis ; Bhatia, Sabhyata (2015) High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea Scientific Reports, 5 . Article ID 13387 -11 pages. ISSN 2045-2322

Parween, Sabiha ; Nawaz, Kashif ; Roy, Riti ; Pole, Anil K. ; Venkata Suresh, B. ; Misra, Gopal ; Jain, Mukesh ; Yadav, Gitanjali ; Parida, Swarup K. ; Tyagi, Akhilesh K. ; Bhatia, Sabhyata ; Chattopadhyay, Debasis (2015) An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.) Scientific Reports, 5 . Article ID 12806-14 pages. ISSN 2045-2322

Khajuria, Yash Paul ; Saxena, Maneesha S. ; Gaur, Rashmi ; Chattopadhyay, Debasis ; Jain, Mukesh ; Parida, Swarup K. ; Bhatia, Sabhyata (2015) Development and integration of genome-wide polymorphic microsatellite markers onto a reference linkage map for constructing a high-density genetic map of chickpea PLOS ONE, 10 (5). Article ID e0125583. ISSN 1932-6203

Meena, Mukesh Kumar ; Ghawana, Sanjay ; Sardar, Atish ; Dwivedi, Vikas ; Khandal, Hitaishi ; Roy, Riti ; Chattopadhyay, Debasis (2015) Investigation of genes encoding calcineurin B-like protein family in legumes and their expression analyses in chickpea (Cicer arietinum L.) PLOS ONE, 10 (4). Article ID e0123640. ISSN 1932-6203 (Submitted)

Bajaj, Deepak ; Upadhyaya, Hari D. ; Khan, Yusuf ; Das, Shouvik ; Badoni, Saurabh ; Shree, Tanima ; Kumar, Vinod ; Tripathi, Shailesh ; Gowda, C. L. L. ; Singh, Sube ; Sharma, Shivali ; Tyagi, Akhilesh K. ; Chattopdhyay, Debasis ; Parida, Swarup K. (2015) A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea Scientific Reports, 5 . Article ID 9264. ISSN 2045-2322

Misra, Gopal ; Priya, Piyush ; Bandhiwal, Nitesh ; Bareja, Neha ; Jain, Mukesh ; Bhatia, Sabhyata ; Chattopadhyay, Debasis ; Tyagi, Akhilesh K. ; Yadav, Gitanjali (2014) The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes BMC Plant Biology, 14 . No pp. given. ISSN 1471-2229

Yadav, Rajiv Kumar ; Chattopadhyay, Debasis (2014) Differential soybean gene expression during early phase of infection with Mungbean yellow mosaic India virus Molecular Biology Reports, 41 (8). pp. 5123-5134. ISSN 0301-4851

Suresh, B. Venkata ; Roy, Riti ; Sahu, Kamlesh ; Misra, Gopal ; Chattopadhyay, Debasis (2014) Tomato genomic resources database: an integrated repository of useful tomato genomic information for basic and applied research PLoS ONE, 9 (1). Article ID e86387. ISSN 1932-6203

Kumari, Kajal ; Muthamilarasan, Mehanathan ; Misra, Gopal ; Gupta, Sarika ; Subramanian, Alagesan ; Parida, Swarup Kumar ; Chattopadhyay, Debasis ; Prasad, Manoj (2013) Development of eSSR-Markers in Setaria italica and their applicability in studying denetic diversity, cross-transferability and comparative mapping in millet and non-millet species PLoS ONE, 8 (6). Article ID e67742. ISSN 1932-6203

Jain, Mukesh ; Misra, Gopal ; Patel, Ravi K. ; Priya, Pushp ; Jhanwar, Shalu ; Khan, Aamir W. ; Shah, Niraj ; Singh, Vikas K. ; Garg, Rohini ; Jeena, Ganga ; Yadav, Manju ; Kant, Chandra ; Sharma, Priyanka ; Yadav, Gitanjali ; Bhatia, Sabhyata ; Tyagi, Akhilesh K. ; Chattopadhyay, Debasis (2013) A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.) The Plant Journal, 74 (5). pp. 715-729. ISSN 0960-7412

Pandey, G. ; Misra, G. ; Kumari, K. ; Gupta, S. ; Parida, S. K. ; Chattopadhyay, D. ; Prasad, M. (2013) Genome-wide development and use of microsatellite markers for large-scale genotyping applications in foxtail millet [Setaria italica (L.)] DNA Research, 20 (2). pp. 197-207. ISSN 1340-2838

Tran, Lam-Son Phan ; Jain, Deepti ; Chattopadhyay, Debasis (2013) Promoter of CaZF, a Chickpea Gene That Positively Regulates Growth and Stress Tolerance, Is Activated by an AP2-Family Transcription Factor CAP2 PLoS ONE, 8 (2). e56737. ISSN 1932-6203

Jain, Deepti ; Chattopadhyay, Debasis (2013) Promoter of CaZF, a chickpea gene that positively regulates growth and stress tolerance, is activated by an AP2-family transcription factor CAP2 PLoS One, 8 (2). Article ID e56737, 11 pages. ISSN 1932-6203

Gaur, R. ; Azam, S. ; Jeena, G. ; Khan, A. W. ; Choudhary, S. ; Jain, M. ; Yadav, G. ; Tyagi, A. K. ; Chattopadhyay, D. ; Bhatia, S. (2012) High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.) DNA Research, 19 (5). pp. 357-373. ISSN 1340-2838

Yadav, Rajiv Kumar ; Chattopadhyay, Debasis (2011) Enhanced viral intergenic region–specific short interfering RNA accumulation and DNA methylation correlates with resistance against a geminivirus Molecular Plant-Microbe Interactions, 24 (10). pp. 1189-1197. ISSN 0894-0282

Garg, Rohini ; Patel, Ravi K. ; Jhanwar, Shalu ; Priya, Pushp ; Bhattacharjee, Annapurna ; Yadav, Gitanjali ; Bhatia, Sabhyata ; Chattopadhyay, Debasis ; Tyagi, Akhilesh K. ; Jain, Mukesh (2011) Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development Plant Physiology, 156 (4). pp. 1661-1678. ISSN 0032-0889

Sahu, Pranav Pankaj ; Rai, Neeraj K. ; Chakraborty, Supriya ; Singh, Major ; Chandrappa, Prasanna H. ; Ramesh, Bandarupalli ; Chattopadhyay, Debasis ; Prasad, Manoj (2010) Tomato cultivar tolerant to tomato leaf curl New Delhi virus infection induces virus-specific short interfering RNA accumulation and defence-associated host gene expression Molecular Plant Pathology, 11 (4). pp. 531-544. ISSN 1464-6722

Jain, Deepti ; Chattopadhyay, Debasis (2010) Analysis of gene expression in response to water deficit of chickpea (Cicer arietinum L.) varieties differing in drought tolerance BMC Plant Biology, 10 (1). p. 24. ISSN 1471-2229

Shukla, Rakesh Kumar ; Tripathi, Vineeta ; Jain, Deepti ; Yadav, Rajiv Kumar ; Chattopadhyay, Debasis (2009) CAP2 enhances germination of transgenic tobacco seeds at high temperature and promotes heat stress tolerance in yeast FEBS Journal, 276 (18). pp. 5252-5262. ISSN 1742-464X

Yadav, Rajiv Kumar ; Shukla, Rakesh Kumar ; Chattopadhyay, Debasis (2009) Soybean cultivar resistant to mungbean yellow mosaic India virus infection induces viral RNA degradation earlier than the susceptible cultivar Virus Research, 144 (1-2). pp. 89-95. ISSN 0168-1702

Tripathi, Vineeta ; Parasuraman, Boominathan ; Laxmi, Ashverya ; Chattopadhyay, Debasis (2009) CIPK6, a CBL-interacting protein kinase is required for development and salt tolerance in plants The Plant Journal, 58 (5). pp. 778-790. ISSN 0960-7412

Jain, Deepti ; Roy, Nilanjan ; Chattopadhyay, Debasis (2009) CaZF, a plant transcription factor functions through and parallel to HOG and calcineurin pathways in Saccharomyces cerevisiae to provide osmotolerance PLoS One, 4 (4). Article ID e5154, 16 pages. ISSN 1932-6203

Nayak, Spurthi N. ; Balaji, Jayashree ; Upadhyaya, Hari D. ; Hash, Tom C. ; Kishor, Kavi P. B. ; Chattopadhyay, Debasis ; Rodriquez, Lina María ; Blair, Matthew W. ; Baum, Michael ; McNally, Kenneth ; This, Dominique ; Hoisington, David A. ; Varshney, Rajeev K. (2009) Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species Plant Science, 177 (5). pp. 460-467. ISSN 0168-9452

Shridhar, Smriti ; Chattopadhyay, Debasis ; Yadav, Gitanjali (2009) PLecDom: a program for identification and analysis of plant lectin domains Nucleic Acids Research, 37 . W452-W458. ISSN 0305-1048

Tripathi, Vineeta ; Syed, Nazia ; Laxmi, Ashverya ; Chattopadhyay, Debasis (2009) Role of CIPK6 in root growth and auxin transport Plant Signaling & Behavior, 4 (7). pp. 663-665. ISSN 1559-2316

Kaur, Harmeet ; Shukla, Rakesh Kumar ; Yadav, Gitanjali ; Chattopadhyay, Debasis ; Majee, Manoj (2008) Two divergent genes encoding L-myo-inositol 1-phosphate synthase1 (CaMIPS1) and 2 (CaMIPS2) are differentially expressed in chickpea Plant, Cell & Environment, 31 (11). pp. 1701-1716. ISSN 0140-7791

Shukla, Rakesh K. ; Raha, Sumita ; Tripathi, Vineeta ; Chattopadhyay, Debasis (2006) Expression of CAP2, an APETALA2-family transcription factor from chickpea, enhances growth and tolerance to dehydration and salt stress in transgenic tobacco Plant Physiology, 142 (1). pp. 113-123. ISSN 0032-0889

Biswas, S. ; Gupta, M. K. ; Chattopadhyay, D. ; Mukhopadhyay, C. K. (2006) Insulin-induced activation of hypoxia-inducible factor-1 requires generation of reactive oxygen species by NADPH oxidase American Journal of Physiology - Heart and Circulatory Physiology, 292 (2). H758-H766. ISSN 0363-6135

Mueller, Lukas A. ; Tanksley, Steven D. ; Giovannoni, Jim J. ; van Eck, Joyce ; Stack, Stephen ; Choi, Doil ; Kim, Byung Dong ; Chen, Mingsheng ; Cheng, Zhukuan ; Li, Chuanyou ; Ling, Hongqing ; Xue, Yongbiao ; Seymour, Graham ; Bishop, Gerard ; Bryan, Glenn ; Sharma, Rameshwar ; Khurana, Jiten ; Tyagi, Akhilesh ; Chattopadhyay, Debasis ; Singh, Nagendra K. ; Stiekema, Willem ; Lindhout, P. ; Jesse, Taco ; Lankhorst, Rene Klein ; Bouzayen, Mondher ; Shibata, Daisuke ; Tabata, Satoshi ; Granell, Antonio ; Botella, Miguel A. ; Giuliano, Giovanni ; Frusciante, Luigi ; Causse, Mathilde ; Zamir, Dani (2005) The tomato sequencing project, the first cornerstone of the International Solanaceae Project (SOL) Comparative and Functional Genomics, 6 (3). pp. 153-158. ISSN 1531-6912

Boominathan, P. ; Shukla, Rakesh ; Kumar , Arun ; Manna, Dipak ; Negi, Divya ; Verma, Praveen K. ; Chattopadhyay, Debasis (2004) Long term transcript accumulation during the development of dehydration adaptation in Cicer arietinum Plant Physiology, 135 (3). pp. 1608-1620. ISSN 0032-0889

Basak, Soumen ; Raha, Tamal ; Chattopadhyay, Debasish ; Majumder, Amitabha ; Shaila, M. S. ; Chattopadhyay, D. J. (2003) Leader RNA binding ability of chandipura virus P protein is regulated by its phosphorylation status: a possible role in genome transcription-replication switch Virology, 307 (2). pp. 372-385. ISSN 0042-6822

Yadav, Vandana ; Kundu, Snehangshu ; Chattopadhyay, Debasis ; Negi, Prem ; Wei, Ning ; Deng, Xing-Wang ; Chattopadhyay, Sudip (2002) Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis The Plant Journal, 31 (6). pp. 741-753. ISSN 0960-7412

Chattopadhyay, D. ; Ghosh, M. K. ; Mal, A. ; Harter, M. L. (2001) Inactivation of p21 by E1A leads to the induction of apoptosis in DNA-damaged cells Journal of Virology, 75 (20). pp. 9844-9856. ISSN 0022-538X

Raha, T. ; Samal, E. ; Majumdar, A. ; Basak, S. ; Chattopadhyay, D. ; Chattopadhyay, D. J. (2000) N-terminal region of P protein of Chandipura virus is responsible for phosphorylation-mediated homodimerization Protein Engineering Design and Selection, 13 (6). pp. 437-444. ISSN 1741-0126

Mal, Asoke ; Chattopadhyay, Debasis ; Ghosh, Mrinal K. ; Poon, Randy Y. C. ; Hunter, Tony ; Harter, Marian L. (2000) P21 and retinoblastoma protein control the absence of DNA replication in terminally differentiated muscle cells The Journal of Cell Biology, 149 (2). pp. 281-292. ISSN 0021-9525

Raha, Tamal ; Chattopadhyay, Debasis ; Chattopadhyay, Dhrubajyoti ; Roy, Siddhartha (1999) A phosphorylation-induced major structural change in the N-terminal domain of the P protein of Chandipura virus Biochemistry, 38 (7). pp. 2110-2116. ISSN 0006-2960

Chattopadhyay, Debasish ; Raha, Tamal ; Chattopadhyay, Dhrubajyoti (1997) Single serine phosphorylation within the acidic domain of Chandipura virus p protein regulates the transcription in vitro Virology, 239 (1). pp. 11-19. ISSN 0042-6822