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Arafat, Md. Yasir ; Narula, Kanika ; Nalwa, Pragya ; Sengupta, Atreyee ; Chakraborty, Niranjan ; Chakraborty, Subhra (2022) Proteomic analysis of phytopathogenic fungus Macrophomina phaseolina identify known and novel mycelial proteins with roles in growth and virulence Journal of Proteins and Proteomics, 13 (3). pp. 149-157. ISSN 2524-4663

Rathi, Divya ; Verma, Jitendra Kumar ; Chakraborty, Subhra ; Chakraborty, Niranjan (2022) Suspension cell secretome of the grain legume Lathyrus sativus (grasspea) reveals roles in plant development and defense responses Phytochemistry, 202 . p. 113296. ISSN 00319422

Rathi, Divya ; Chakraborty, Subhra ; Chakraborty, Niranjan (2021) Grasspea, a critical recruit among neglected and underutilized legumes, for tapping genomic resources Current Plant Biology, 26 . p. 100200. ISSN 22146628

Mishra, Divya ; Shekhar, Shubhendu ; Chakraborty, Subhra ; Chakraborty, Niranjan (2021) High temperature stress responses and wheat: Impacts and alleviation strategies Environmental and Experimental Botany, 190 . p. 104589. ISSN 00988472

Mishra, Divya ; Shekhar, Shubhendu ; Chakraborty, Subhra ; Chakraborty, Niranjan (2021) Wheat 2‐Cys peroxiredoxin plays a dual role in chlorophyll biosynthesis and adaptation to high temperature The Plant Journal, 105 (5). pp. 1374-1389. ISSN 0960-7412

Narula, Kanika ; Elagamey, Eman ; Abdellatef, Magdi A. E. ; Sinha, Arunima ; Ghosh, Sudip ; Chakraborty, Niranjan ; Chakraborty, Subhra (2020) Chitosan‐triggered immunity to Fusarium in chickpea is associated with changes in the plant extracellular matrix architecture, stomatal closure and remodeling of the plant metabolome and proteome The Plant Journal, 103 (2). pp. 561-583. ISSN 0960-7412

Sinha, Arunima ; Haider, Toshiba ; Narula, Kanika ; Ghosh, Sudip ; Chakraborty, Niranjan ; Chakraborty, Subhra (2020) Integrated Seed Proteome and Phosphoproteome Analyses Reveal Interplay of Nutrient Dynamics, Carbon–Nitrogen Partitioning, and Oxidative Signaling in Chickpea PROTEOMICS, 20 (8). p. 1900267. ISSN 1615-9853

Narula, Kanika ; Choudhary, Pooja ; Ghosh, Sudip ; Elagamey, Eman ; Chakraborty, Niranjan ; Chakraborty, Subhra (2019) Comparative Nuclear Proteomics Analysis Provides Insight into the Mechanism of Signaling and Immune Response to Blast Disease Caused byMagnaportheoryzaein Rice PROTEOMICS, 19 (3). p. 1800188. ISSN 1615-9853

Mishra, Divya ; Shekhar, Shubhendu ; Chakraborty, Subhra ; Chakraborty, Niranjan (2018) Carboxylate clamp tetratricopeptide repeat (TPR) domain containing Hsp90 cochaperones in Triticeace: An insight into structural and functional diversification Environmental and Experimental Botany, 155 . pp. 31-44. ISSN 00988472

Aggarwal, Pooja Rani ; Nag, Papri ; Choudhary, Pooja ; Chakraborty, Niranjan ; Chakraborty, Subhra (2018) Genotype-independent Agrobacterium rhizogenes-mediated root transformation of chickpea: a rapid and efficient method for reverse genetics studies Plant Methods, 14 (1). ISSN 1746-4811

Ashraf, Nasheeman ; Basu, Swaraj ; Narula, Kanika ; Ghosh, Sudip ; Tayal, Rajul ; Gangisetty, Nagaraju ; Biswas, Sushmita ; Aggarwal, Pooja R. ; Chakraborty, Niranjan ; Chakraborty, Subhra (2018) Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility Scientific Reports, 8 (1). ISSN 2045-2322

Nag, Papri ; Aggarwal, Pooja Rani ; Ghosh, Sudip ; Narula, Kanika ; Tayal, Rajul ; Maheshwari, Nidhi ; Chakraborty, Niranjan ; Chakraborty, Subhra (2017) Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during Fusarium infection of Caenorhabditis elegans Cell Death Discovery, 3 (1). ISSN 2058-7716

Elagamey, Eman ; Sinha, Arunima ; Narula, Kanika ; Abdellatef, Magdi A.E. ; Chakraborty, Niranjan ; Chakraborty, Subhra (2017) Molecular Dissection of Extracellular Matrix Proteome Reveals Discrete Mechanism RegulatingVerticillium DahliaeTriggered Vascular Wilt Disease in Potato PROTEOMICS, 17 (23-24). p. 1600373. ISSN 16159853

Elagamey, Eman ; Narula, Kanika ; Sinha, Arunima ; Ghosh, Sudip ; Abdellatef, Magdi A. E. ; Chakraborty, Niranjan ; Chakraborty, Subhra (2017) Quantitative Extracellular Matrix Proteomics Suggests Cell Wall Reprogramming in Host-Specific Immunity During Vascular Wilt Caused byFusarium oxysporumin Chickpea PROTEOMICS, 17 (23-24). p. 1600374. ISSN 16159853

Wardhan, Vijay ; Pandey, Aarti ; Chakraborty, Subhra ; Chakraborty, Niranjan (2016) Chickpea transcription factor CaTLP1 interacts with protein kinases, modulates ROS accumulation and promotes ABA-mediated stomatal closure Scientific Reports, 6 (1). ISSN 2045-2322

Narula, Kanika ; Ghosh, Sudip ; Aggarwal, Pooja R. ; Sinha, Arunima ; Chakraborty, Niranjan ; Chakraborty, Subhra (2016) Comparative Proteomics of Oxalate Downregulated Tomatoes Points toward Cross Talk of Signal Components and Metabolic Consequences during Post-harvest Storage Frontiers in Plant Science, 7 . ISSN 1664-462X

Elagamey, Eman ; Narula, Kanika ; Sinha, Arunima ; Aggarwal, Pooja ; Ghosh, Sudip ; Chakraborty, Niranjan ; Chakraborty, Subhra (2016) Extracellular Matrix Proteome and Phosphoproteome of Potato Reveals Functionally Distinct and Diverse Canonical and Non-Canonical Proteoforms Proteomes, 4 (3). p. 20. ISSN 2227-7382

Ghosh, Sudip ; Narula, Kanika ; Sinha, Arunima ; Ghosh, Rajgourab ; Jawa, Priyanka ; Chakraborty, Niranjan ; Chakraborty, Subhra (2016) Proteometabolomic Study of Compatible Interaction in Tomato Fruit Challenged with Sclerotinia rolfsii Illustrates Novel Protein Network during Disease Progression Frontiers in Plant Science, 7 . ISSN 1664-462X

Ghosh, Sudip ; Narula, Kanika ; Sinha, Arunima ; Ghosh, Rajgourab ; Jawa, Priyanka ; Chakraborty, Niranjan ; Chakraborty, Subhra (2016) Proteometabolomic analysis of transgenic tomato overexpressing oxalate decarboxylase uncovers novel proteins potentially involved in defense mechanism against Sclerotinia Journal of Proteomics, 143 . pp. 242-253. ISSN 18743919

Chakraborty, Subhra ; Salekdeh, Ghasem Hosseini ; Yang, Pingfang ; Woo, Sun Hee ; Chin, Chiew Foan ; Gehring, Chris ; Haynes, Paul A. ; Mirzaei, Mehdi ; Komatsu, Setsuko (2015) Proteomics of important food crops in the Asia Oceania region: current status and future perspectives Journal of Proteome Research, 14 (7). pp. 2723-2744. ISSN 1535-3893

Shekhar, Shubhendu ; Mishra, Divya ; Buragohain, Alak Kumar ; Chakraborty, Subhra ; Chakraborty, Niranjan (2015) Comparative analysis of phytochemicals and nutrient availability in two contrasting cultivars of sweet potato (Ipomoea batatas L.) Food Chemistry, 173 . pp. 957-965. ISSN 0308-8146

Narula, Kanika ; Pandey, Aarti ; Gayali, Saurabh ; Chakraborty, Niranjan ; Chakraborty, Subhra (2015) Birth of plant proteomics in India: a new horizon Journal of Proteomics, 127 . pp. 34-43. ISSN 1874-3919

Chakraborty, Niranjan ; Chakraborty, Subhra ; Rathi, Divya (2015) Proteomics of an Orphan Legume, Grasspea: Current Status and Future Strategy Plant Tissue Culture and Biotechnology, 25 (1). pp. 117-141. ISSN 1817-3721

Irfan, Mohammad ; Ghosh, Sumit ; Kumar, Vinay ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2014) Insights into transcriptional regulation of β-D-N-acetylhexosaminidase, an N-glycan-processing enzyme involved in ripening-associated fruit softening Journal of Experimental Botany, 65 (20). pp. 5835-5848. ISSN 0022-0957

Kumar, Rajiv ; Kumar, Amit ; Subba, Pratigya ; Gayali, Saurabh ; Barua, Pragya ; Chakraborty, Subhra ; Chakraborty, Niranjan (2014) Nuclear phosphoproteome of developing chickpea seedlings (Cicer arietinum L.) and protein-kinase interaction network Journal of Proteomics, 105 . pp. 58-73. ISSN 1874-3919

Verma, Jitendra Kumar ; Gayali, Saurabh ; Dass, Suchismita ; Kumar, Amit ; Parveen, Shaista ; Chakraborty, Subhra ; Chakraborty, Niranjan (2014) OsAlba1, a dehydration-responsive nuclear protein of rice (Oryza sativa L. ssp. indica), participates in stress adaptation Phytochemistry, 100 . pp. 16-25. ISSN 0031-9422

Jaiswal, Dinesh Kumar ; Mishra, Poonam ; Subba, Pratigya ; Rathi, Divya ; Chakraborty, Subhra ; Chakraborty, Niranjan (2014) Membrane-associated proteomics of chickpea identifies Sad1/UNC-84 protein (CaSUN1), a novel component of dehydration signaling Scientific Reports, 4 . Article ID 4177, 10 pages. ISSN 2045-2322

Jaiswal, Dinesh Kumar ; Ray, Doel ; Choudhary, Mani Kant ; Subba, Pratigya ; Kumar, Amit ; Verma, Jitendra ; Kumar, Rajiv ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2013) Comparative proteomics of dehydration response in the rice nucleus: new insights into the molecular basis of genotype-specific adaptation Proteomics, 13 (23-24). pp. 3478-3497. ISSN 1615-9853

Subba, Pratigya ; Barua, Pragya ; Kumar, Rajiv ; Datta, Asis ; Soni, Kamlesh Kumar ; Chakraborty, Subhra ; Chakraborty, Niranjan (2013) Phosphoproteomic dynamics of chickpea (Cicer arietinum L.) reveals shared and distinct components of dehydration response Journal of Proteome Research, 12 (11). pp. 5025-5047. ISSN 1535-3893

Ghosh, Sumit ; Singh, Upendra Kumar ; Meli, Vijaykumar S. ; Kumar, Vinay ; Kumar, Anil ; Irfan, Mohammad ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2013) Induction of senescence and identification of differentially expressed genes in tomato in response to monoterpene PLoS ONE, 8 (9). Article ID e76029, 10 pages. ISSN 1932-6203

Agrawal, Lalit ; Narula, Kanika ; Basu, Swaraj ; Shekhar, Shubhendu ; Ghosh, Sudip ; Datta, Asis ; Chakraborty, Niranjan ; Chakraborty, Subhra (2013) Comparative proteomics reveals a role for seed storage protein AmA1 in cellular growth, development, and nutrient accumulation Journal of Proteome Research, 12 (11). pp. 4904-4930. ISSN 1535-3893

Subba, Pratigya ; Kumar, Rajiv ; Gayali, Saurabh ; Shekhar, Shubhendu ; Parveen, Shaista ; Pandey, Aarti ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2013) Characterisation of the nuclear proteome of a dehydration-sensitive cultivar of chickpea and comparative proteomic analysis with a tolerant cultivar Proteomics, 13 (12-13). pp. 1973-1992. ISSN 1615-9853

Shekhar, Shubhendu ; Agrawal, Lalit ; Buragohain, Alak Kumar ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2013) Genotype independent regeneration and agrobacterium-mediated genetic transformation of sweet potato (Ipomoea batatas L.) Plant Tissue Culture and Biotechnology, 23 (1). pp. 87-100. ISSN 1817-3721

Narula, Kanika ; Datta, Asis ; Chakraborty, Niranjan ; Chakraborty, Subhra (2013) Comparative analyses of nuclear proteome: extending its function Frontiers in Plant Science, 4 . Article ID 100, 14 pages. ISSN 1664-462X

Chakraborty, Niranjan ; Ghosh, Rajgourab ; Ghosh, Sudip ; Narula, Kanika ; Tayal, Rajul ; Datta, Asis ; Chakraborty, Subhra (2013) Reduction of Oxalate Levels in Tomato Fruit and Consequent Metabolic Remodeling Following Overexpression of a Fungal Oxalate Decarboxylase Plant Physiology, 162 (1). pp. 364-378. ISSN 1532-2548

Jaiswal, Dinesh Kumar ; Ray, Doel ; Subba, Pratigya ; Mishra, Poonam ; Gayali, Saurabh ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2012) Proteomic analysis reveals the diversity and complexity of membrane proteins in chickpea (Cicer arietinum L.) Proteome Science, 10 . Article ID 59, 16 pages. ISSN 1477-5956

Kamthan, Ayushi ; Kamthan, Mohan ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2012) A simple protocol for extraction, derivatization, and analysis of tomato leaf and fruit lipophilic metabolites using GC-MS Protocol Exchange . No pp. given. ISSN 2043-0116

Kamthan, Mohan ; Mukhopadhyay, Gauranga ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2012) Quantitative proteomics and metabolomics approaches to demonstrate N-acetyl-d-glucosamine inducible amino acid deprivation response as morphological switch in Candida albicans Fungal Genetics and Biology, 49 (5). pp. 369-378. ISSN 1087-1845

Kamthan, Ayushi ; Kamthan, Mohan ; Azam, Mohammad ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2012) Expression of a fungal sterol desaturase improves tomato drought tolerance, pathogen resistance and nutritional quality Scientific Reports, 2 . Article ID 951, 10 pages. ISSN 2045-2322

Wardhan, Vijay ; Jahan, Kishwer ; Gupta, Sonika ; Chennareddy, Srinivasarao ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2012) Overexpression of CaTLP1, a putative transcription factor in chickpea (Cicer arietinum L.), promotes stress tolerance Plant Molecular Biology, 79 (4-5). pp. 479-493. ISSN 0167-4412

Gupta, Sonika ; Wardhan, Vijay ; Verma, Shikha ; Gayali, Saurabh ; Rajamani, Uma ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2011) Characterization of the secretome of chickpea suspension culture reveals pathway abundance and the expected and unexpected secreted proteins Journal of Proteome Research, 10 (11). pp. 5006-5015. ISSN 1535-3893

Bhushan, Deepti ; Jaiswal, Dinesh Kumar ; Ray, Doel ; Basu, Debarati ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2011) Dehydration-responsive reversible and irreversible changes in the extracellular matrix: comparative proteomics of chickpea genotypes with contrasting tolerance Journal of Proteome Research, 10 (4). pp. 2027-2046. ISSN 1535-3893

Ghosh, Sumit ; Meli, Vijaykumar S. ; Kumar, Anil ; Thakur, Archana ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2011) The N-glycan processing enzymes α-mannosidase and β-D-N-acetylhexosaminidase are involved in ripening-associated softening in the non-climacteric fruits of capsicum Journal of Experimental Botany, 62 (2). pp. 571-582. ISSN 0022-0957

Meli, Vijaykumar S. ; Ghosh, Sumit ; Prabha, T. N. ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2010) Enhancement of fruit shelf life by suppressing N-glycan processing enzymes Proceedings of the National Academy of Sciences, 107 (6). pp. 2413-2418. ISSN 0027-8424

Chakraborty, Subhra ; Chakraborty, Niranjan ; Agrawal, Lalit ; Ghosh, Sudip ; Narula, Kanika ; Shekhar, Shubhendu ; Naik, Prakash S. ; Pande, P. C. ; Chakrborti, Swarup Kumar ; Datta, Asis (2010) Next-generation protein-rich potato expressing the seed protein gene AmA1 is a result of proteome rebalancing in transgenic tuber Proceedings of the National Academy of Sciences, 107 (41). pp. 17533-17538. ISSN 0027-8424

Ashraf, Nasheeman ; Ghai, Deepali ; Barman, Pranjan ; Basu, Swaraj ; Nagaraju, Gangisetty ; Mandal, Mihir K ; Chakraborty, Niranjan ; Datta, Asis ; Chakraborty, Subhra (2009) Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrates predicted and unexpected genes and novel regulators of plant immunity BMC Genomics, 10 (1). p. 415. ISSN 1471-2164

Choudhary, Mani Kant ; Basu, Debarati ; Datta, Asis ; Chakraborty, Niranjan ; Chakraborty, Subhra (2009) Dehydration-responsive nuclear proteome of rice (Oryza sativa L.) illustrates protein network, novel regulators of cellular adaptation, and evolutionary perspective Molecular & Cellular Proteomics, 8 (7). pp. 1579-1598. ISSN 1535-9476

Chakraborty, Subhra ; Chakraborty, Niranjan ; Jain, Deepti ; Salunke, Dinakar M. ; Datta, Asis (2009) Active site geometry of oxalate decarboxylase from Flammulina velutipes: Role of histidine-coordinated manganese in substrate recognition Protein Science, 11 (9). pp. 2138-2147. ISSN 09618368

Agrawal, Lalit ; Chakraborty, Subhra ; Jaiswal, Dinesh Kumar ; Gupta, Sonika ; Datta, Asis ; Chakraborty, Niranjan (2008) Comparative Proteomics of Tuber Induction, Development and Maturation Reveal the Complexity of Tuberization Process in Potato (Solanum tuberosum L.) Journal of Proteome Research, 7 (9). pp. 3803-3817. ISSN 1535-3893

Pandey, Aarti ; Chakraborty, Subhra ; Datta, Asis ; Chakraborty, Niranjan (2007) Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.) Molecular & Cellular Proteomics, 7 (1). pp. 88-107. ISSN 1535-9476

Bhushan, Deepti ; Pandey, Aarti ; Choudhary, Mani Kant ; Datta, Asis ; Chakraborty, Subhra ; Chakraborty, Niranjan (2007) Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress Molecular & Cellular Proteomics, 6 (11). pp. 1868-1884. ISSN 1535-9476

Azam, Mohammad ; Meenu, Kesarwani ; Chakraborty, Subhra ; Natarajan, Krishnamurthy (2002) Cloning and characterization of the 5'-flanking region of the oxalate decarboxylase gene from Flammulina velutipes Biochemical Journal, 367 (1). pp. 67-75. ISSN 0264-6021

Sarmah, Bhaskarjyoti ; Chakraborty, Niranjan ; Chakraborty, Subhra ; Datta, Asis (2002) Plant pre-mRNA splicing in fission yeast, Schizosaccharomyces pombe Biochemical and Biophysical Research Communications, 293 (4). pp. 1209-1216. ISSN 0006291X

Chakraborty, S. (2002) Premature termination of RNA polymerase II mediated transcription of a seed protein gene in Schizosaccharomyces pombe Nucleic Acids Research, 30 (13). pp. 2940-2949. ISSN 13624962

Chakraborty, Subhra ; Chakraborty, Niranjan ; Datta, Asis (2000) Increased nutritive value of transgenic potato by expressing a nonallergenic seed albumin gene from Amaranthus hypochondriacus Proceedings of the National Academy of Sciences, 97 (7). pp. 3724-3729. ISSN 0027-8424