Browse by Fellow

Awasthi, Kapila ; Srivastava, Alok ; Bhattacharya, Sudha ; Bhattacharya, Alok (2021) Tissue specific expression of sialic acid metabolic pathway: role in GNE myopathy Journal of Muscle Research and Cell Motility, 42 (1). pp. 99-116. ISSN 0142-4319

Pinotsis, Nikos ; Zielinska, Karolina ; Babuta, Mrigya ; Arolas, Joan L. ; Kostan, Julius ; Khan, Muhammad Bashir ; Schreiner, Claudia ; Salmazo, Anita ; Ciccarelli, Luciano ; Puchinger, Martin ; Gkougkoulia, Eirini A. ; Ribeiro, Euripedes de Almeida ; Marlovits, Thomas C. ; Bhattacharya, Alok ; Djinovic-Carugo, Kristina (2020) Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin PNAS, 117 (36). pp. 22101-22112. ISSN 0027-8424

Das, Sarbashis ; Pettersson, B. M. Fredrik ; Behra, Phani Rama Krishna ; Ramesh, Malavika ; Dasgupta, Santanu ; Bhattacharya, Alok ; Kirsebom, Leif A. (2016) The Mycobacterium phlei genome: expectations and surprises Genome Biology and Evolution, 8 (4). pp. 975-985. ISSN 1759-6653

Saha, Arpita ; Bhattacharya, Sudha ; Bhattacharya, Alok (2016) Serum stress responsive gene EhslncRNA of Entamoeba histolytica is a novel long noncoding RNA Scientific Reports, 6 . Article ID 27476, 9 pages. ISSN 2045-2322

Saha, Arpita ; Gaurav, Amit Kumar ; Bhattacharya, Sudha ; Bhattacharya, Alok (2015) Molecular basis of pathogenesis in amoebiasis Current Clinical Microbiology Reports, 2 (4). pp. 143-154. ISSN 2196-5471

Roychowdhury, Tanmoy ; Mandal, Saurav ; Bhattacharya, Alok (2015) Analysis of IS6110 insertion sites provide a glimpse into genome evolution of Mycobacterium tuberculosis Scientific Reports, 5 . Article ID 12567, 10 pages. ISSN 2045-2322

Das, Sarbashis ; Pettersson, B. M. Fredrik ; Behra, Phani Rama Krishna ; Ramesh, Malavika ; Dasgupta, Santanu ; Bhattacharya, Alok ; Kirsebom, Leif A. (2015) Characterization of three Mycobacterium spp. with potential use in bioremediation by genome sequencing and comparative genomics Genome Biology and Evolution, 7 (7). pp. 1871-1886. ISSN 1759-6653

Kumar, Sanjeev ; Aslam, Saima ; Mazumder, Mohit ; Dahiya, Pradeep ; Murmu, Aruna ; Manjasetty, Babu A. ; Zaidi, Rana ; Bhattacharya, Alok ; Gourinath, S. (2014) Crystal structure of calcium binding protein-5 from Entamoeba histolytica and its involvement in initiation of phagocytosis of human erythrocytes PLoS Pathogens, 10 (12). Article ID e1004532-14 pages. ISSN 1553-7374

Ahmad, Hafiz M. ; Muiwo, Pamchui ; Ramachandran, Suganthi S. ; Pandey, Priyatama ; Gupta, Yogendra K. ; Kumar, Lalit ; Kulshreshtha, Ritu ; Bhattacharya, Alok (2014) miR-22 regulates expression of oncogenic neuro-epithelial transforming gene 1, NET1 The FEBS Journal, 281 (17). pp. 3904-3919. ISSN 1742-464X

Ralston, Katherine S. ; Solga, Michael D. ; Mackey-Lawrence, Nicole M. ; Somlata, ; Bhattacharya, Alok ; Petri Jr., William A. (2014) Trogocytosis by Entamoeba histolytica contributes to cell killing and tissue invasion Nature, 508 . pp. 526-530. ISSN 0028-0836

Mazumder, Mohit ; Padhan, Narendra ; Bhattacharya, Alok ; Gourinath, Samudrala (2014) Prediction and analysis of canonical EF hand loop and qualitative estimation of Ca²⁺ binding affinity PLoS ONE, 9 (4). Article ID e96202, 10 pages. ISSN 1932-6203

Pettersson, Fredrik B. M. ; Behra, Krishna P. R. ; Manduva, Satyam ; Das, Sarbashis ; Dasgupta, Santanu ; Bhattacharya, Alok ; Kirsebom, Leif A. (2014) Draft genome sequence of Saccharopolyspora rectivirgula Genome Announcements, 2 (1). Article ID e01117, 2 pages. ISSN 2169-8287

Grewal, Jaspreet Singh ; Padhan, Narendra ; Aslam, Saima ; Bhattacharya, Alok ; Lohia, Anuradha (2013) The calcium binding protein EhCaBP6 is a microtubular-end binding protein in Entamoeba histolytica Cellular Microbiology, 15 (12). pp. 2020-2033. ISSN 1462-5814

Vaz, Candida ; Ahmad, Hafiz M. ; Bharti, Richa ; Pandey, Priyatama ; Kumar, Lalit ; Kulshreshtha, Ritu ; Bhattacharya, Alok (2013) Analysis of the microRNA transcriptome and expression of different isomiRs in human peripheral blood mononuclear cells BMC Research Notes, 6 . Article ID 390, 12 pages. ISSN 1756-0500

Rout, Ashok K. ; Patel, Sunita ; Somlata, . ; Shukla, Manish ; Saraswathi, Deepa ; Bhattacharya, Alok ; Chary, Kandala V. R. (2013) Functional manipulation of a calcium-binding protein from Entamoeba histolytica guided by paramagnetic NMR Journal of Biological Chemistry, 288 . pp. 23473-23487. ISSN 0021-9258

Pettersson, B. M. Fredrik ; Nitharwal, Ram G. ; Das, Sarbashis ; Behra, Krishna P. R. ; Benedik, Evgen ; Arasu, Uma T. ; Islam, Nurul M. ; Dasgupta, Santanu ; Bhattacharya, Alok ; Kirsebom, Leif A. (2013) Identification and expression of stressosomal proteins in Mycobacterium marinumunder various growth and stress conditions FEMS Microbiology Letters, 342 (2). pp. 98-105. ISSN 0378-1097

Kaur, Charanpreet ; Vishnoi, Anchal ; Ariyadasa, Thilini Udayangani ; Bhattacharya, Alok ; Singla-Pareek, Sneh Lata ; Sopory, Sudhir Kumar (2013) Episodes of horizontal gene-transfer and gene-fusion led to co-existence of different metal-ion specific glyoxalase I Scientific Reports, 3 . Article ID 3076, 10 pages. ISSN 2045-2322

Das, Sarbashis ; Roychowdhury, Tanmoy ; Kumar, Parameet ; Kumar, Anil ; Kalra, Priya ; Singh, Jitendra ; Singh, Sarman ; Prasad, H. K. ; Bhattacharya, Alok (2013) Genetic heterogeneity revealed by sequence analysis of Mycobacterium tuberculosis isolates from extra-pulmonary tuberculosis patients BMC Genomics, 14 . Article ID 404, 14 pages. ISSN 1471-2164

Roychowdhury, Tanmoy ; Vishnoi, Anchal ; Bhattacharya, Alok (2013) Next-generation anchor based phylogeny (NexABP): constructing phylogeny from next-generation sequencing data Scientific Reports, 3 . Article ID 2634, 7 pages. ISSN 2045-2322

Hon, Chung-Chau ; Weber, Christian ; Sismeiro, Odile ; Proux, Caroline ; Koutero, Mikael ; Deloger, Marc ; Das, Sarbashis ; Agrahari, Mridula ; Dillies, Marie-Agnes ; Jagla, Bernd ; Coppee, Jean-Yves ; Bhattacharya, Alok ; Guillen, Nancy (2013) Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica Nucleic Acids Research, 41 (3). pp. 1936-1952. ISSN 0305-1048

Abhyankar, Mayuresh M. ; Shrimal, Shiteshu ; Gilchrist, Carol A. ; Bhattacharya, Alok ; Petri Jr., William A. (2012) The Entamoeba histolytica serum-inducible transmembrane kinase EhTMKB1-9 is involved in intestinal amebiasis International Journal for Parasitology: Drugs and Drug Resistance, 2 . pp. 243-248. ISSN 2211-3207

Sibley, L. David ; Aslam, Saima ; Bhattacharya, Sudha ; Bhattacharya, Alok (2012) The calmodulin-like calcium binding protein EhCaBP3 of Entamoeba histolytica regulates phagocytosis and is involved in actin dynamics PLoS Pathogens, 8 (12). Article ID e1003055, 14 pages. ISSN 1553-7374

Singh, Nishant ; Ojha, Sandeep ; Bhattacharya, Alok ; Bhattacharya, Sudha (2012) Establishment of a transient transfection system and expression of firefly luciferase in Entamoeba invadens Molecular and Biochemical Parasitology, 183 (1). pp. 90-93. ISSN 0166-6851

Bharti, Richa ; Das, Ram ; Sharma, Pragya ; Katoch, Kiran ; Bhattacharya, Alok (2012) MTCID: a database of genetic polymorphisms in clinical isolates of Mycobacterium tuberculosis Tuberculosis, 92 (2). pp. 166-172. ISSN 1472-9792

Gupta, Rashi ; Dewan, Isha ; Bharti, Richa ; Bhattacharya, Alok (2012) Differential expression analysis for RNA-Seq data ISRN Bioinformatics, 2012 . Article ID 817508, 8 pages. ISSN 2090-7346

Das, Sarbashis ; Duggal, Priyanka ; Roy, Rahul ; Myneedu, Vithal P. ; Behera, Digamber ; Prasad, Hanumanthappa K. ; Bhattacharya, Alok (2012) Identification of hot and cold spots in genome of Mycobacterium tuberculosis using Shewhart control charts Scientific Reports, 2 . Article ID 297, 6 pages. ISSN 2045-2322

Bhattacharya, A. ; Bhattacharya, S. ; Majumder, C. ; Das, G. P. (2011) Third conformer of graphane: a first-principles density functional theory study Physical Review B, 83 . Article ID 033404. ISSN 1098-0121

Rout, Ashok K. ; Padhan, Narendra ; Barnwal, R. P. ; Bhattacharya, A. ; Chary, Kandala V. R. (2011) Calmodulin-like protein from Entamoeba histolytica: solution structure and calcium-binding properties of a partially folded protein Biochemistry, 50 (2). pp. 181-193. ISSN 0006-2960

Shrimal, Shiteshu ; Bhattacharya, Sudha ; Bhattacharya, Alok (2010) Serum-dependent selective expression of EhTMKB1-9, a member of Entamoeba histolytica B1 family of transmembrane kinases PLoS Pathogens, 6 (6). Article ID e1000929, 19 pages. ISSN 1553-7374

DeSalle, Robert ; Vishnoi, Anchal ; Roy, Rahul ; Prasad, Hanumanthappa K. ; Bhattacharya, Alok (2010) Anchor-based whole genome phylogeny (ABWGP): a tool for inferring evolutionary relationship among closely related microorganims PLoS One, 5 (11). Article ID e14159, 11 pages. ISSN 1932-6203

Agarwal, Sumeet ; Vaz, Candida ; Bhattacharya, Alok ; Srinivasan, Ashwin (2010) Prediction of novel precursor miRNAs using a Context-Sensitive Hidden Markov Model (CSHMM) BMC Bioinformatics, 11 (Supp 1). Article ID S29, 7 pages. ISSN 1471-2105

Das, Sarbashis ; Yennamalli, Ragothaman M. ; Vishnoi, Anchal ; Gupta, Parul ; Bhattacharya, Alok (2009) Single-nucleotide variations associated with Mycobacterium tuberculosis KwaZulu-Natal strains Journal of Biosciences, 34 (3). pp. 397-404. ISSN 0250-5991

Mustafi, Sourajit Mitra ; Mutalik, Ritu Bansal ; Jain, Ruchi ; Chandra, Kousik ; Bhattacharya, Alok ; Chary, Kandala V. R. (2009) Structural characterization of a novel Ca²⁺-binding protein from Entamoeba histolytica: structural basis for the observed functional differences with its isoform Journal of Biological Inorganic Chemistry, 14 (3). pp. 471-483. ISSN 0949-8257

Das, Sarbashis ; Vishnoi, Anchal ; Bhattacharya, Alok (2009) ABWGAT: anchor-based whole genome analysis tool Bioinformatics, 25 (24). pp. 3319-3320. ISSN 1367-4803

Tyagi, Sonika ; Vaz, Candida ; Gupta, Vipin ; Bhatia, Rohit ; Maheshwari, Sachin ; Srinivasan, Ashwin ; Bhattacharya, Alok (2008) CID-miRNA: a web server for prediction of novel miRNA precursors in human genome Biochemical and Biophysical Research Communications, 372 (4). pp. 831-834. ISSN 0006-291X

Arya, Ranjana ; Aslam, Saima ; Gupta, Shivani ; Bora, Roop Singh ; Vijayakrishnan, Lalitha ; Gulati, Pankaj ; Naithani, Sudha ; Mukherjee, Shohini ; Dastidar, Sunanda ; Bhattacharya, Alok ; Saini, Kulvinder Singh (2008) Production and characterization of pharmacologically active recombinant human phosphodiesterase 4B in Dictyostelium discoideum Biotechnology Journal, 3 (7). pp. 938-947. ISSN 1860-6768

Rout, Ashok K. ; Barnwal, Ravi P. ; Padhan, Narendra ; Bhattacharya, Alok ; Chary, Kandala V. R. (2008) Sequence specific ¹H, ¹³C and ¹⁵N resonance assignments of a calmodulin-like calcium-binding protein from the protozoan parasite Entamoeba histolytica (EhCaM) Biomolecular NMR Assignments, 2 (1). pp. 77-79. ISSN 1874-2718

Weber, Christian ; Blazquez, Samantha ; Marion, Sabrina ; Ausseur, Christophe ; Vats, Divya ; Krzeminski, Mickael ; Rigothier, Marie-Christine ; Maroun, Rachid C. ; Bhattacharya, Alok ; Guillen, Nancy (2008) Bioinformatics and functional analysis of an Entamoeba histolytica mannosyltransferase necessary for parasite complement resistance and hepatical infection PLoS Neglected Tropical Diseases, 2 (2). Article ID e165, 9 pages. ISSN 1935-2735

Agarwal, Subhash M. ; Jain, Ruchi ; Bhattacharya, Alok ; Azam, Amir (2008) Inhibitors of Escherichia coli serine acetyltransferase block proliferation of Entamoeba histolytica trophozoites International Journal for Parasitology, 38 (2). pp. 137-141. ISSN 0020-7519

Arya, Ranjana ; Bhattacharya, Alok ; Saini, Kulvinder Singh (2008) Dictyostelium discoideum—a promising expression system for the production of eukaryotic proteins The FASEB Journal, 22 (12). pp. 4055-4066. ISSN 0892-6638

Oswal, Nupur ; Sahni, Narinder Singh ; Bhattacharya, Alok ; Komath, Sneha Sudha ; Muthuswami, Rohini (2008) Unique motifs identify PIG-A proteins from glycosyltransferases of the GT4 family BMC Evolutionary Biology, 8 . Article ID 168, 14 pages. ISSN 1471-2148

Hirata, Ken K. ; Que, Xuchu ; Melendez-Lopez, Samuel G. ; Debnath, Anjan ; Myers, Simona ; Herdman, D. Scott ; Orozco, Esther ; Bhattacharya, Alok ; McKerrow, James H. ; Reed, Sharon L. (2007) A phagocytosis mutant of Entamoeba histolytica is less virulent due to deficient proteinase expression and release Experimental Parasitology, 115 (2). pp. 192-199. ISSN 0014-4894

Vishnoi, Anchal ; Roy, Rahul ; Bhattacharya, Alok (2007) Comparative analysis of bacterial genomes: identification of divergent regions in mycobacterial strains using an anchor-based approach Nucleic Acids Research, 35 (11). pp. 3654-3667. ISSN 0305-1048

Vishwakarma, Ram A. ; Anand, Monica T. ; Arya, Ranjana ; Vats, Divya ; Bhattacharya, Alok (2006) Glycosylated inositol phospholipid from Entamoeba histolytica: identification and structural characterization Molecular and Biochemical Parasitology, 145 (1). pp. 121-124. ISSN 0166-6851

Nandi, Soumyadeep ; Mehra, Nipun ; Lynn, Andrew M. ; Bhattacharya, Alok (2005) Comparison of theoretical proteomes: identification of COGs with conserved and variable pI within the multimodal pI distribution BMC Genomics, 6 . Article ID 116, 12 pages. ISSN 1471-2164

Gourinath, S. ; Padhan, Narendra ; Alam, Neelima ; Bhattacharya, Alok (2005) Crystallization and preliminary crystallographic analysis of calcium-binding protein-2 from Entamoeba histolytica and its complexes with strontium and the IQ1 motif of myosin V Acta Crystallographica Section F, F61 . pp. 417-420. ISSN 1744-3091

Dutta, S. ; Basu, R. ; Guha, S. ; Sanki, P. ; Bhattacharya, A. ; Neogi, R. ; Das, D. ; Bakshi, K. D. ; Sengupta, R. G. ; Banerjee, R. P. ; Bhattacharya, S. ; Sarkar, U. N. ; Mittra, D. ; Saha, D. ; Banerjee, S. (2004) Removal of sixty-three primary cardiac tumors-experience in a govt, hospital over last 16 yrs Indian Journal of Thoracic and Cardiovascular Surgery, 20 (1). p. 48. ISSN 0970-9134

Reddi, Honey ; Bhattacharya, Alok ; Kumar, Vijay (2002) The calcium-binding protein of Entamoeba histolytica as a fusion partner for expression of peptides in Escherichia coli Biotechnology and Applied Biochemistry, 36 (3). pp. 213-218. ISSN 0885-4513

Lynn, Andrew M. ; Jain, Chakresh Kumar ; Kosalai, K. ; Barman, Pranjan ; Thakur, Nupur ; Batra, Harish ; Bhattacharya, Alok (2001) An automated annotation tool for genomic DNA sequences using GeneScan and BLAST Journal of Genetics, 80 (1). pp. 9-16. ISSN 0022-1333

Mittal, Vivek ; Bhattacharya, Alok ; Shantanu Bhattacharya, Shantanu (1992) Organization of repeated sequences in the region downstream to rRNA genes in the rDNA episome of Entamoeba histolytica Archives of Medical Research, 23 (2). pp. 17-18. ISSN 0188-4409

Bhattacharya, Sudha ; Ranadive, Satish N. ; Bhattacharya, Alok (1986) Expression of Mycobacterium tuberculosis genes in Escherichia coli Journal of Biosciences, 10 (2). pp. 277-281. ISSN 0250-5991