Role of non-planar peptide unit in regular polypeptide helices: a new model for poly-beta-benzyl-L-aspartate

Abstract

The effect of non-planarity of the peptide unit on helical structures stabilized by intrachain hydrogen bonds is discussed. While the present calculations generally agree with those already reported in the literature for right-handed helical structures, it is found that the most stable left-handed structure is a novel helix, called the delta-helix. Its helical parameters are close to these reported for poly-beta-benzyl-L-aspartate. Conformational energy calculations show that poly-beta-benzyl-L-aspartate with the delta-helical structure is considerably more stable than the structure it is generally believed to take up (the omega-helix) by about 15 kcal/mol-residue.