Interruptions of (CG)_n sequences by GG, TG and CA need not prevent B to Z transition in solution

Abstract

Oligonucleotides containing alternating purines-pyrimidines with AT base pairs have been shown to exist in the Z-form preferably in solid state. We report that oligodeoxyribonucleotides with GG, TG and CA interruptions in their alternating CG sequences can undergo B to Z transition in solution in the absence of any chemical modification or topological constraint. The sequences, d(CGCGCGGCGCGC) and d(CGTGCGCACG) have been synthesised and shown to adopt Z-conformation in presence of millimolar concentrations of Ni²⁺ under low water activity conditions. Significance of GG, TG and CA interruptions in the B to Z transition is discussed.