On sorting by 3-bounded transpositions

Mahajan, Meena ; Rama, Raghavan ; Vijayakumar, S. (2006) On sorting by 3-bounded transpositions Discrete Mathematics, 306 (14). pp. 1569-1585. ISSN 0012-365X

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Official URL: http://doi.org/10.1016/j.disc.2005.06.035

Related URL: http://dx.doi.org/10.1016/j.disc.2005.06.035

Abstract

Abstract Heath and Vergara [Sorting by short block moves, Algorithmica 28 (2000) 323–352] proved the equivalence between sorting by 3-bounded transpositions and sorting by correcting skips and correcting hops. This paper explores various algorithmic as well as combinatorial aspects of correcting skips/hops, with the aim of understanding 3-bounded transpositions better. We show that to sort any permutation via correcting hops and skips,⌊ n/2⌋ correcting skips suffice. We also present a tighter analysis of the 4 3 approximation algorithm of Heath and Vergara, and a possible simplification. Along the way, we study the class H n of those permutations of S n which can be sorted using correcting hops alone, and characterize large subsets of this class. We obtain a combinatorial characterization of the set G n⊆ S n of all correcting-hop-free permutations, and describe a linear-time algorithm to optimally sort such permutations. We also show how to efficiently sort a permutation with a minimum number of correcting moves.

Item Type:Article
Source:Copyright of this article belongs to Elsevier B.V.
Keywords:Sorting; Bounded transpositions; Approximation; Genome rearrangement
ID Code:128005
Deposited On:14 Oct 2022 11:28
Last Modified:14 Oct 2022 11:28

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