Tabassum, Rubina ; Mahajan, Anubha ; Dwivedi, Om Prakash ; Chauhan, Ganesh ; Spurgeon, Charles J. ; Kumar, M. V. Kranthi ; Ghosh, Saurabh ; Madhu, S. V. ; Mathur, Sandeep K ; Chandak, Giriraj Ratan ; Tandon, Nikhil ; Bharadwaj, Dwaipayan (2012) Common variants of SLAMF1 and ITLN1 on 1q21 are associated with type 2 diabetes in Indian population Journal of Human Genetics, 57 (3). pp. 184-190. ISSN 1434-5161
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Official URL: http://www.nature.com/jhg/journal/v57/n3/full/jhg2...
Related URL: http://dx.doi.org/10.1038/jhg.2011.150
Abstract
Though multiple studies link chromosomal regions 1q21–q23 and 20q13 with type 2 diabetes, fine mapping of these regions is yet to confirm gene(s) explaining the linkages. These candidate regions remain unexplored in Indians, which is a high-risk population for type 2 diabetes. Hypothesizing regulatory regions to have a more important role in complex disorders, we examined association of 207 common variants in proximal promoter and untranslated regions of genes on 1q21–23 and 20q13 with type 2 diabetes in 2115 North Indians. Further, top signals were replicated in an independent group of 2085 North Indians. Variants-rs11265455-SLAMF1 (odds ratios (OR)=1.32, P=1.1 × 10−3), rs1062827-F11R (OR=1.36, P=1.7 × 10−3) and rs12565932-F11R (OR=1.35, P=1.8 × 10−3) were top signals for association with type 2 diabetes whereas rs1333062-ITLN1 (OR=1.28, P=3.4 × 10−3) showed strongest association in body mass index-stratified analysis. Replication of these four variants confirmed associations of rs11265455-SLAMF1 (OR=1.27, P=9.1 × 10−3) and rs1333062-ITLN1 (OR=1.25, P=1.1 × 10−3) with type 2 diabetes. Meta-analysis further corroborated the association of rs11265455-SLAMF1 (OR random effect=1.29, P random effect=3.9 × 10−5) and rs1333062-ITLN1 (OR random effect=1.19, P random effect=1.8 × 10−4). In conclusion, the study demonstrates that variants of SLAMF1 and ITLN1, both implicated in inflammation, are associated with type 2 diabetes in Indians.
Item Type: | Article |
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Source: | Copyright of this article belongs to Nature Publishing Group. |
Keywords: | Association; Candidate Regions; Common Variants; Indians; Type 2 Diabetes |
ID Code: | 107001 |
Deposited On: | 25 Jun 2017 15:32 |
Last Modified: | 25 Jun 2017 15:32 |
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