Browse by Fellow

Karunarathne, W. K. Ajith ; Giri, Lopamudra ; Patel, Anilkumar K. ; Venkatesh, Kareenhalli V. ; Gautam, N. (2013) Optical control demonstrates switch-like PIP3 dynamics underlying the initiation of immune cell migration Proceedings of the National Academy of Sciences of the United States of America, 110 (17). E1575-E1583. ISSN 0027-8424

Parmar, Jignesh H. ; Bhartiya, Sharad ; Venkatesh, K. V. (2012) Quantification of metabolism in Saccharomyces cerevisiae under hyperosmotic conditions using elementary mode analysis Journal of Industrial Microbiology and Biotechnology, 39 (6). pp. 927-941. ISSN 1367-5435

Pannala, V. R. ; Hazarika, S. J. ; Bhat, P. J. ; Bhartiya, S. ; Venkatesh, K. V. (2012) Growth-related model of the GAL system in Saccharomyces cerevisiae predicts behaviour of several mutant strains IET Systems Biology, 6 (2). pp. 44-53. ISSN 1751-8849

Malakar, Pushkar ; Venkatesh, K. V. (2012) Effect of substrate and IPTG concentrations on the burden to growth of Escherichia coli on glycerol due to the expression of Lac proteins Applied Microbiology and Biotechnology, 93 (6). pp. 2543-2549. ISSN 0175-7598

Anbumathi, P. ; Bhartiya, Sharad ; Venkatesh, K. V. (2011) Mathematical modeling of fission yeast Schizosaccharomyces pombe cell cycle: exploring the role of multiple phosphatases Systems and Synthetic Biology, 5 (3). pp. 115-129. ISSN 1872-5325

Rajvanshi, Meghna ; Venkatesh, K. V. (2011) Phenotypic characterization of Corynebacterium glutamicum under osmotic stress conditions using elementary mode analysis Journal of Industrial Microbiology and Biotechnology, 38 (9). pp. 1345-1357. ISSN 1367-5435

Pannala, Venkat Reddy ; Ahammed Sherief, K. Y. ; Bhartiya, Sharad ; Venkatesh, K. V. (2011) Dynamic analysis of the KlGAL regulatory system in Kluyveromyces lactis: a comparative study with Saccharomyces cerevisiae Systems and Synthetic Biology, 5 (1-2). pp. 69-85. ISSN 1872-5325

Parmar, Jignesh H. ; Bhartiya, Sharad ; Venkatesh, K. V. (2011) Characterization of the adaptive response and growth upon hyperosmotic shock in Saccharomyces cerevisiae Molecular BioSystems, 7 (4). pp. 1138-1148. ISSN 1742-206X

Radhakrishnan, Devesh ; Rajvanshi, Meghna ; Venkatesh, K. V. (2010) Phenotypic characterization of Corynebacterium glutamicum using elementary modes towards synthesis of amino acids Systems and Synthetic Biology, 4 (4). pp. 281-291. ISSN 1872-5325

Pannala, Venkat R. ; Bhartiya, Sharad ; Venkatesh, Kareenhalli V. (2010) Experimental and steady-state analysis of the GAL regulatory system in Kluyveromyces lactis FEBS Journal, 277 (14). pp. 2987-3002. ISSN 1742-464X

Vuppula, Rajitha R. ; Tirumkudulu, Mahesh S. ; Venkatesh, Kareenhalli V. (2010) Mathematical modeling and experimental validation of chemotaxis under controlled gradients of methyl-aspartate in Escherichia coli Molecular BioSystems, 6 (6). pp. 1082-1092. ISSN 1742-206X

Vuppula, Rajitha R. ; Tirumkudulu, Mahesh S. ; Venkatesh, K. V. (2010) Chemotaxis of Escherichia coli to L-serine Physical Biology, 7 (2). Article ID 026007. ISSN 1478-3975

Pannala, Venkat Reddy ; Bhat, Paike Jayadeva ; Bhartiya, Sharad ; Venkatesh, K. V. (2010) Systems biology of GAL regulon in Saccharomyces cerevisiae Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2 (1). pp. 98-106. ISSN 1939-5094

Zambre, Suhas S. ; Venkatesh, K. V. ; Shah, N. G. (2010) Tomato redness for assessing ozone treatment to extend the shelf life Journal of Food Engineering, 96 (3). pp. 463-468. ISSN 0260-8774

Nandy, S. K. ; Venkatesh, K. V. (2010) Application of methylene blue dye reduction test (MBRT) to determine growth and death rates of microorganisms African Journal of Microbiology Research, 4 (2). 061-070. ISSN 1996-0808

Vinod, Palakkad Krishnan Unni ; Venkatesh, Kareenhalli Viswanath (2009) Quantification of the effect of amino acids on an integrated mTOR and insulin signaling pathway Molecular BioSystems, 5 (10). pp. 1163-1173. ISSN 1742-206X

Parmar, J. H. ; Bhartiya, Sharad ; Venkatesh, K. V. (2009) A model-based study delineating the roles of the two signaling branches of Saccharomyces cerevisiae, Sho1 and Sln1, during adaptation to osmotic stress Physical Biology, 6 (3). Article ID 036019. ISSN 1478-3975

Chavan, Abhijit R. ; Raghunathan, Anuradha ; Venkatesh, K. V. (2009) Modeling and experimental studies on intermittent starch feeding and citrate addition in simultaneous saccharification and fermentation of starch to flavor compounds Journal of Industrial Microbiology and Biotechnology, 36 (4). pp. 509-519. ISSN 1367-5435

Nandy, Subir Kumar ; Venkatesh, K. V. (2008) Effect of carbon and nitrogen on the cannibalistic behavior of Bacillus subtilis Applied Biochemistry and Biotechnology, 151 (2-3). p. 424. ISSN 0273-2289

Nandy, Subir Kumar ; Prasad, Vinay ; Venkatesh, K. V. (2008) Effect of temperature on the cannibalistic behavior of Bacillus subtilis Applied and Environmental Microbiology, 74 (23). pp. 7427-7430. ISSN 0099-2240

Prasad, Vinay ; Venkatesh, K. V. (2008) Stochastic analysis of the GAL genetic switch in Saccharomyces cerevisiae: modeling and experiments reveal hierarchy in glucose repression BMC Systems Biology, 2 (1). Article ID 97 -17 pages. ISSN 1752-0509

Gayen, Kalyan ; Venkatesh, K. V. (2008) Quantification of cell size distribution as applied to the growth of Corynebacterium glutamicum Microbiological Research, 163 (5). pp. 586-593. ISSN 0944-5013

Vinod, Palakkad Krishnan Unni ; Venkatesh, Kareenhalli V. (2008) A steady state model for the transcriptional regulation of filamentous growth in Saccharomyces cerevisiae In Silico Biology, 8 (3-4). pp. 207-222. ISSN 1386-6338

Vinod, P. K. ; Venkatesh, V. K. (2008) Quantification of signaling networks Journal of the Indian Institute of Science, 88 (1). pp. 1-26. ISSN 0970-4140

Rawool, Subodh B. ; Venkatesh, K. V. (2007) Steady state approach to model gene regulatory networks —simulation of microarray experiments Biosystems, 90 (3). pp. 636-655. ISSN 0303-2647

Manish, S. ; Venkatesh, K. V. ; Banerjee, Rangan (2007) Metabolic flux analysis of biological hydrogen production by Escherichia coli International Journal of Hydrogen Energy, 32 (16). pp. 3820-3830. ISSN 0360-3199

Mutalik, Vivek K. ; Venkatesh, K. V. (2007) A theoretical steady state analysis indicates that induction of Escherichia coli glnALG operon can display all-or-none behavior Biosystems, 90 (1). pp. 1-19. ISSN 0303-2647

Chaudhary, N. ; Bhartiya, S. ; Venkatesh, K. V. (2007) System-level analysis of tryptophan regulation in Escherichia coli – performance under starved and well-fed conditions IET Systems Biology, 1 (3). pp. 181-189. ISSN 1751-8849

Gayen, Kalyan ; Venkatesh, K. V. (2007) A phenomenological model to represent the kinetics of growth by Corynebacterium glutamicum for lysine production Journal of Industrial Microbiology and Biotechnology, 34 (5). pp. 363-372. ISSN 1367-5435

Vinod, P. K. ; Venkatesh, K. V. (2007) Specificity of MAPK signaling towards FLO11 expression is established by crosstalk from cAMP pathway Systems and Synthetic Biology, 1 (2). pp. 99-108. ISSN 1872-5325

Gayen, Kalyan ; Gupta, Manish ; Venkatesh, Kareenhalli V. (2007) Elementary mode analysis to study the preculturing effect on the metabolic state of Lactobacillus rhamnosus during growth on mixed substrates In Silico Biology, 7 (2). pp. 123-139. ISSN 1386-6338

Mutalik, Vivek K. ; Venkatesh, K. V. (2006) Effect of the MAPK cascade structure, nuclear translocation and regulation of transcription factors on gene expression Biosystems, 85 (2). pp. 144-157. ISSN 0303-2647

Bhartiya, Sharad ; Chaudhary, Nikhil ; Venkatesh, K. V. ; Doyle, Francis J. (2006) Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series Journal of the Royal Society Interface, 3 (8). pp. 383-391. ISSN 1742-5689

Verma, Malkhey ; Rawool, Subodh ; Bhat, Paike Jayadeva ; Venkatesh, K. V. (2006) Biological significance of autoregulation through steady state analysis of genetic networks Biosystems, 84 (1). pp. 39-48. ISSN 0303-2647

Bapat, Prashant ; Nandy, Subir Kumar ; Wangikar, Pramod ; Venkatesh, K. V. (2006) Quantification of metabolically active biomass using Methylene Blue dye Reduction Test (MBRT): measurement of CFU in about 200 s Journal of Microbiological Methods, 65 (1). pp. 107-116. ISSN 0167-7012

Bapat, Prashant M. ; Bhartiya, Sharad ; Venkatesh, K. V. ; Wangikar, Pramod P. (2006) Structured kinetic model to represent the utilization of multiple substrates in complex media during rifamycin B fermentation Biotechnology and Bioengineering, 93 (4). pp. 779-790. ISSN 0006-3592

Nandy, Subir Kumar ; Bapat, Prashant M. ; Venkatesh, K. V. (2006) Sporulating bacteria prefers predation to cannibalism in mixed cultures FEBS Letters, 581 (1). pp. 151-156. ISSN 0014-5793

Verma, Malkhey ; Bhat, Paike J. ; Venkatesh, K. V. (2005) Steady-state analysis of glucose repression reveals hierarchical expression of proteins under Mig1p control in Saccharomyces cerevisiae Biochemical Journal, 388 (3). pp. 843-849. ISSN 0264-6021

Gupta, Kshitiz ; Thomas, Dina ; Vidya, S. V. ; Venkatesh, K. V. ; Ramakumar, S. (2005) Detailed protein sequence alignment based on spectral similarity score (SSS) BMC Bioinformatics, 6 (1). Article ID 105, 16 pages. ISSN 1471-2105

Mutalik, Vivek K. ; Venkatesh, K. V. (2005) Quantification of the glycogen cascade system: the ultrasensitive responses of liver glycogen synthase and muscle phosphorylase are due to distinctive regulatory designs Theoretical Biology and Medical Modelling, 2 (1). Article ID 19, 18 pages. ISSN 1742-4682

Poolman, M. G. ; Venkatesh, K. V. ; Pidcock, M. K. ; Fell, D. A. (2004) A method for the determination of flux in elementary modes, and its application to Lactobacillus rhamnosus Biotechnology and Bioengineering, 88 (5). pp. 601-612. ISSN 0006-3592

Mutalik, Vivek K. ; Singh, Aditya P. ; Edwards, Jeremy S. ; Venkatesh, K. V. (2004) Equilibrium analysis of allosteric interactions shows zero-order effects Cell Biochemistry and Biophysics, 41 (2). pp. 179-192. ISSN 1085-9195

Verma, Malkhey ; Bhat, Paike J. ; Bhartiya, Sharad ; Venkatesh, K. V. (2004) A steady-state modeling approach to validate an in vivo mechanism of the GAL regulatory network in Saccharomyces cerevisiae European Journal of Biochemistry, 271 (20). pp. 4064-4074. ISSN 0014-2956

Jyoti, B. D. ; Suresh, A. K. ; Venkatesh, K. V. (2004) Effect of preculturing conditions on growth of Lactobacillus rhamnosus on medium containing glucose and citrate Microbiological Research, 159 (1). pp. 35-42. ISSN 0944-5013

Patel, Shwetal ; Venkatesh, K. V. ; Edwards, Jeremy S. (2004) An integrated mechanistic model for transcription-coupled nucleotide excision repair DNA Repair, 3 (3). pp. 343-348. ISSN 1568-7864

Verma, Malkhey ; Bhat, Paike Jayadeva ; Venkatesh, K. V. (2003) Quantitative analysis of GAL genetic switch of saccharomyces cerevisiae reveals that nucleocytoplasmic shuttling of Gal80p results in a highly sensitive response to galactose Journal of Biological Chemistry, 278 (49). pp. 48764-48769. ISSN 0021-9258

Bajpai-Dikshit, Jyoti ; Suresh, Akkihebbal K. ; Venkatesh, Kareenhalli V. (2003) An optimal model for representing the kinetics of growth and product formation by Lactobacillus rhamnosus on multiple substrates Journal of Bioscience and Bioengineering, 96 (5). pp. 481-486. ISSN 1389-1723

Jyoti, B. D. ; Suresh, A. K. ; Venkatesh, K. V. (2003) Diacetyl production and growth of Lactobacillus rhamnosus on multiple substrates World Journal of Microbiology and Biotechnology, 19 (5). pp. 509-514. ISSN 0959-3993

Bhartiya, Sharad ; Rawool, Subodh ; Venkatesh, K. V. (2003) Dynamic model of Escherichia coli tryptophan operon shows an optimal structural design The Febs Journal, 270 (12). pp. 2644-2651. ISSN 0014-2956

Kumar, Santosh ; Punekar, Narayan S. ; Satya Narayan, V. ; Venkatesh, K. V. (2000) Metabolic fate of glutamate and evaluation of flux through the 4-aminobutyrate (GABA) shunt in Aspergillus niger Biotechnology and Bioengineering, 67 (5). pp. 575-584. ISSN 0006-3592

Gadgil, Chetan J. ; Venkatesh, K. V. (1997) Structured model for batch culture growth of Lactobacillus bulgaricus Journal of Chemical Technology & Biotechnology, 68 (1). pp. 89-93. ISSN 0268-2575

Gadgil, Chetan J. ; Bhat, P. J. ; Venkatesh, K. V. (1996) Cybernetic model for the growth of Saccharomyces cerevisiae on melibiose Biotechnology Progress, 12 (6). pp. 744-750. ISSN 8756-7938