Browse by Fellow

Sane, Mrudula ; Parveen, Shazia ; Agashe, Deepa (2025) Mutation bias alters the distribution of fitness effects of mutations PLoS Biology, 23 (7). e3003282. ISSN 1545-7885

Adamala, Katarzyna P. ; Agashe, Deepa ; Belkaid, Yasmine ; Bittencourt, Daniela Matias de C. ; Cai, Yizhi ; Chang, Matthew W. ; Chen, Irene A. ; Church, George M. ; Cooper, Vaughn S. ; Davis, Mark M. ; Devaraj, Neal K. ; Endy, Drew ; Esvelt, Kevin M. ; Glass, John I. ; Hand, Timothy W. ; Inglesby, Thomas V. ; Isaacs, Farren J. ; James, Wilmot G. ; Jones, Jonathan D. G. ; Kay, Michael S. ; Lenski, Richard E. ; Liu, Chenli ; Medzhitov, Ruslan ; Nicotra, Matthew L. ; Oehm, Sebastian B. ; Pannu, Jaspreet ; Relman, David A. ; Schwille, Petra ; Smith, James A. ; Suga, Hiroaki ; Szostak, Jack W. ; Talbot, Nicholas J. ; Tiedje, James M. ; Venter, J. Craig ; Winter, Gregory ; Zhang, Weiwen ; Zhu, Xinguang ; Zuber, Maria T. (2024) Confronting risks of mirror life Science, 386 (6728). pp. 1351-1353. ISSN 0036-8075

Jean-François, Ferveur ; Pratibha, Sanjenbam ; Stéphane, Fraichard ; Enisa, Aruçi ; Fabrice, Neiers ; Bernard, Moussian ; Deepa, Agashe ; Claude, Everaerts (2024) Experimental evolution induced by maternal post-copulatory factors in drosophila Behavior Genetics, 55 (1). pp. 29-42. ISSN 0001-8244

Sreepadmanabh, M ; Ganesh, Meenakshi ; Sanjenbam, Pratibha ; Kurzthaler, Christina ; Agashe, Deepa ; Bhattacharjee, Tapomoy (2024) Cell shape affects bacterial colony growth under physical confinement Nature Communications, 15 (1). ISSN 2041-1723

Sanjenbam, Pratibha ; Agashe, Deepa (2024) Divergence and convergence in epiphytic and endophytic phyllosphere bacterial communities of rice landraces mSphere, 9 (11). ISSN 2379-5042

Garushyants, Sofya K ; Sane, Mrudula ; Selifanova, Maria V ; Agashe, Deepa ; Bazykin, Georgii A ; Gelfand, Mikhail S (2024) Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors Genome Biology and Evolution, 16 (4). ISSN 1759-6653

Prakash, Arun ; Agashe, Deepa ; Khan, Imroze (2023) Alteration of diet microbiota limits the experimentally evolved immune priming response in flour beetles, but not pathogen resistance Journal of Evolutionary Biology, 36 (12). pp. 1745-1752. ISSN 1420-9101

Agashe, Deepa ; Sane, Mrudula ; Singhal, Shivansh (2023) Revisiting the role of genetic variation in adaptation The American Naturalist, 202 (4). pp. 486-502. ISSN 0003-0147

Raval, Parth K ; Ngan, Wing Yui ; Gallie, Jenna ; Agashe, Deepa (2023) The layered costs and benefits of translational redundancy elife, 12 . ISSN 2050-084X

Wortel, Meike T. ; Agashe, Deepa ; Bailey, Susan F. ; Bank, Claudia ; Bisschop, Karen ; Blankers, Thomas ; Cairns, Johannes ; Colizzi, Enrico Sandro ; Cusseddu, Davide ; Desai, Michael M. ; van Dijk, Bram ; Egas, Martijn ; Ellers, Jacintha ; Groot, Astrid T. ; Heckel, David G. ; Johnson, Marcelle L. ; Kraaijeveld, Ken ; Krug, Joachim ; Laan, Liedewij ; Lässig, Michael ; Lind, Peter A. ; Meijer, Jeroen ; Noble, Luke M. ; Okasha, Samir ; Rainey, Paul B. ; Rozen, Daniel E. ; Shitut, Shraddha ; Tans, Sander J. ; Tenaillon, Olivier ; Teotónio, Henrique ; de Visser, J. Arjan G. M. ; Visser, Marcel E. ; Vroomans, Renske M. A. ; Werner, Gijsbert D. A. ; Wertheim, Bregje ; Pennings, Pleuni S. (2022) Towards evolutionary predictions: Current promises and challenges Evolutionary Applications, 16 (1). pp. 3-21. ISSN 1752-4571

Mahajan, Saurabh ; Agashe, Deepa (2022) Evolutionary jumps in bacterial GC content G3; Genes|Genomes|Genetics, 12 (8). ISSN 2160-1836

Wahl, Lindi M. ; Agashe, Deepa (2022) Selection bias in mutation accumulation Evolution, 76 (3). pp. 528-540. ISSN 0014-3820

Prakash, Arun ; Agashe, Deepa ; Khan, Imroze (2022) The costs and benefits of basal infection resistance vs immune priming responses in an insect Developmental & Comparative Immunology, 126 . p. 104261. ISSN 0145-305X

Agarwal, Aparna ; Agashe, Deepa (2020) The red flour beetle Tribolium castaneum: A model for host-microbiome interactions PLoS One, 15 (10). e0239051. ISSN 1932-6203

Samhita, Laasya ; Raval, Parth K. ; Agashe, Deepa (2020) Global mistranslation increases cell survival under stress in Escherichia coli PLOS Genetics, 16 (3). e1008654. ISSN 1553-7404

Sanjenbam, Pratibha ; Buddidathi, Radhika ; Venkatesan, Radhika ; Shivaprasad, P. V. ; Agashe, Deepa (2020) Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India PLoS One, 15 (2). e0228550. ISSN 1932-6203

Deb, Rittik ; Nair, Ashwin ; Agashe, Deepa (2019) Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies PeerJ, 7 . e8058. ISSN 2167-8359

Khan, Imroze ; Prakash, Arun ; Agashe, Deepa (2019) Pathogen susceptibility and fitness costs explain variation in immune priming across natural populations of flour beetles Journal of Animal Ecology, 88 (9). pp. 1332-1342. ISSN 0021-8790

Kaminski Strauss, Sivan ; Schirman, Dvir ; Jona, Ghil ; Brooks, Aaron N. ; Kunjapur, Aditya M. ; Nguyen Ba, Alex N. ; Flint, Alice ; Solt, Andras ; Mershin, Andreas ; Dixit, Atray ; Yona, Avihu H. ; Csörgő, Bálint ; Busby, Bede Phillip ; Hennig, Bianca P. ; Pál, Csaba ; Schraivogel, Daniel ; Schultz, Daniel ; Wernick, David G. ; Agashe, Deepa ; Levi, Dikla ; Zabezhinsky, Dmitry ; Russ, Dor ; Sass, Ehud ; Tamar, Einat ; Herz, Elad ; Levy, Emmanuel D. ; Church, George M. ; Yelin, Idan ; Nachman, Iftach ; Gerst, Jeffrey E. ; Georgeson, Joseph M. ; Adamala, Katarzyna P. ; Steinmetz, Lars M. ; Rübsam, Marc ; Ralser, Markus ; Klutstein, Michael ; Desai, Michael M. ; Walunjkar, Nilima ; Yin, Ning ; Aharon Hefetz, Noa ; Jakimo, Noah ; Snitser, Olga ; Adini, Omri ; Kumar, Prashant ; Soo Hoo Smith, Rachel ; Zeidan, Razi ; Hazan, Ronen ; Rak, Roni ; Kishony, Roy ; Johnson, Shannon ; Nouriel, Shira ; Vonesch, Sibylle C. ; Foster, Simmie ; Dagan, Tal ; Wein, Tanita ; Karydis, Thrasyvoulos ; Wannier, Timothy M. ; Stiles, Timothy ; Olin-Sandoval, Viridiana ; Mueller, William F. ; Bar-On, Yinon M. ; Dahan, Orna ; Pilpel, Yitzhak (2019) Evolthon: A community endeavor to evolve lab evolution PLoS Biology, 17 (3). e3000182. ISSN 1545-7885

Sane, Mrudula ; Miranda, Joshua John ; Agashe, Deepa (2018) Antagonistic pleiotropy for carbon use is rare in new mutations Evolution, 72 (10). pp. 2202-2213. ISSN 0014-3820

Agavekar, Gaurav ; Agashe, Deepa ; Economo, Evan P. (2018) Dimensions of ant diversity on a small tropical island Insect Conservation and Diversity, 12 (2). pp. 161-171. ISSN 1752-458X

Ravi Kumar, Vrinda ; Issar, Swastika ; Agashe, Deepa (2018) The induction of larval resource preference in heterogeneous habitats Ecological Entomology, 43 (6). pp. 719-730. ISSN 0307-6946

Phalnikar, Kruttika ; Kunte, Krushnamegh ; Agashe, Deepa (2018) Dietary and developmental shifts in butterfly-associated bacterial communities Royal Society Open Science, 5 (5). p. 171559. ISSN 2054-5703

Diwan, Gaurav D ; Agashe, Deepa (2018) Wobbling forth and drifting back: The evolutionary history and impact of bacterial tRNA modifications Molecular Biology and Evolution, 35 (8). pp. 2046-2059. ISSN 0737-4038

Khan, Imroze ; Prakash, Arun ; Issar, Swastika ; Umarani, Mihir ; Sasidharan, Rohit ; Masagalli, Jagadeesh N. ; Lama, Prakash ; Venkatesan, Radhika ; Agashe, Deepa (2018) Female density-dependent chemical warfare underlies fitness effects of group sex ratio in flour beetles The American Naturalist, 191 (3). pp. 306-317. ISSN 0003-0147

Mahajan, Saurabh ; Agashe, Deepa (2018) Translational selection for speed is not sufficient to explain variation in bacterial codon usage bias Genome Biology and Evolution, 10 (2). pp. 562-576. ISSN 1759-6653

Agashe, Deepa (2017) The road not taken: Could stress-specific mutations lead to different evolutionary paths? PLoS Biology, 15 (6). e2002862. ISSN 1545-7885

Khan, Imroze ; Prakash, Arun ; Agashe, Deepa (2016) Divergent immune priming responses across flour beetle life stages and populations Ecology and Evolution, 6 (21). pp. 7847-7855. ISSN 2045-7758

Diwan, Gaurav D ; Agashe, Deepa (2016) The frequency of internal Shine–Dalgarno-like motifs in prokaryotes Genome Biology and Evolution, 8 (6). pp. 1722-1733. ISSN 1759-6653

Agashe, Deepa ; Sane, Mrudula ; Phalnikar, Kruttika ; Diwan, Gaurav D. ; Habibullah, Alefiyah ; Martinez-Gomez, Norma Cecilia ; Sahasrabuddhe, Vinaya ; Polachek, William ; Wang, Jue ; Chubiz, Lon M. ; Marx, Christopher J. (2016) Large-effect beneficial synonymous mutations mediate rapid and parallel adaptation in a bacterium Molecular Biology and Evolution, 33 (6). pp. 1542-1553. ISSN 0737-4038

Carroll, Sean ; Chubiz, Lon ; Agashe, Deepa ; Marx, Christopher (2015) Parallel and divergent evolutionary solutions for the optimization of an engineered central metabolism in methylobacterium extorquens AM1 Microorganisms, 3 (2). pp. 152-174. ISSN 2076-2607

Parent, Christine E. ; Agashe, Deepa ; Bolnick, Daniel I. (2014) Intraspecific competition reduces niche width in experimental populations Ecology and Evolution, 4 (20). pp. 3978-3990. ISSN 2045-7758

Agashe, Deepa ; Martinez-Gomez, N. Cecilia ; Drummond, D. Allan ; Marx, Christopher J. (2012) Good codons, bad transcript: Large reductions in gene expression and fitness arising from synonymous mutations in a key enzyme Molecular Biology and Evolution, 30 (3). pp. 549-560. ISSN 1537-1719

Agashe, Deepa ; Falk, Jay J. ; Bolnick, Daniel I. (2011) Effects of founding genetic variation on adaptation to a novel resource Evolution, 65 (9). pp. 2481-2491. ISSN 0014-3820

Agashe, Deepa ; Bolnick, Daniel I. (2011) Dietary niche and population dynamic feedbacks in a novel habitat Oikos, 121 (3). pp. 347-356. ISSN 0030-1299

Agashe, Deepa (2009) The stabilizing effect of intraspecific genetic variation on population dynamics in novel and ancestral habitats The American Naturalist, 174 (2). pp. 255-267. ISSN 0003-0147