IntGeom: a server for the calculation of the interaction geometry between planar groups in proteins

Pal, Arumay ; Bhattacharyya, Rajasri ; Dasgupta, Maitrayee ; Mandal, Saptarshi ; Chakrabarti, Pinak (2009) IntGeom: a server for the calculation of the interaction geometry between planar groups in proteins Journal of Proteomics & Bioinformatics, 2 . 060-063. ISSN 0974-276X

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Official URL: http://www.omicsonline.org/ArchiveJPB/2009/January...

Related URL: http://dx.doi.org/10.4172/jpb.1000061

Abstract

IntGeom is a server for the calculation of the relative orientation between any two planar groups in protein side chains. IntGeom1 considers ten planar groups, while IntGeom2 is meant for studying the contact between a S-containing group and an aromatic residue. When the interaction is between two aromatic residues or involving an aromatic ring with Pro or Arg or an amide side chain, the occurrence of any C-H···π (N-H···π) interaction is also studied. All contacts between any two of the above types of residues juxtaposed on the protein structure can be displayed. The software is available at: http://www.boseinst.ernet.in/resources/bioinfo/stag.html.

Item Type:Article
Source:Copyright of this article belongs to OMICS Publishing Group, Dayton, OH.
Keywords:Interaction Geometry; Aromatic-aromatic Interaction; Saromatic Interaction; Identification of Weak Hydrogen Bond
ID Code:89211
Deposited On:24 Apr 2012 12:39
Last Modified:19 May 2016 03:48

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