Chakrabarti, Saikat ; Prem Anand, A. ; Bhardwaj, Nitin ; Pugalenthi, Ganesan ; Sowdhamini, R. (2005) SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs Nucleic Acids Research, 33 (S-2). W274-W276. ISSN 0305-1048
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Official URL: http://nar.oxfordjournals.org/content/33/suppl_2/W...
Related URL: http://dx.doi.org/10.1093/nar/gki493
Abstract
Establishment of similarities between proteins is very important for the study of the relationship between sequence, structure and function and for the analysis of evolutionary relationships. Motif-based search methods play a crucial role in establishing the connections between proteins that are particularly useful for distant relationships. This paper reports SCANMOT, a web-based server that searches for similarities between proteins by simultaneous matching of multiple motifs. SCANMOT searches for similar sequences in entire sequence databases using multiple conserved regions and utilizes inter-motif spacing as restraints. The SCANMOT server is available via http://www.ncbs.res.in/~faculty/mini/scanmot/scanmot.html.
| Item Type: | Article |
|---|---|
| Source: | Copyright of this article belongs to Oxford University Press. |
| ID Code: | 61257 |
| Deposited On: | 15 Sep 2011 03:57 |
| Last Modified: | 15 Sep 2011 03:57 |
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