Biochemical and structural characterization of residue 96 mutants of Plasmodium falciparum triosephosphate isomerase: active-site loop conformation, hydration and identification of a dimer-interface ligand-binding site

Gayathri, P. ; Banerjee, Mousumi ; Vijayalakshmi, A. ; Balaram, Hemalatha ; Balaram, P. ; Murthy, M. R. N. (2009) Biochemical and structural characterization of residue 96 mutants of Plasmodium falciparum triosephosphate isomerase: active-site loop conformation, hydration and identification of a dimer-interface ligand-binding site Acta Crystallographica Section D: Biological Crystallography, 65 (8). pp. 847-857. ISSN 0907-4449

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Official URL: http://www3.interscience.wiley.com/journal/1225241...

Related URL: http://dx.doi.org/10.1107/S0907444909018666

Abstract

Plasmodium falciparum TIM (PfTIM) is unique in possessing a Phe residue at position 96 in place of the conserved Ser that is found in TIMs from the majority of other organisms. In order to probe the role of residue 96, three PfTIM mutants, F96S, F96H and F96W, have been biochemically and structurally characterized. The three mutants exhibited reduced catalytic efficiency and a decrease in substrate-binding affinity, with the most pronounced effects being observed for F96S and F96H. The kcat values and Km values are (2.54 ± 0.19) × 105 min-1 and 0.39 ± 0.049 mM, respectively, for the wild type; (3.72 ± 0.28) × 103 min-1 and 2.18 ± 0.028 mM, respectively, for the F96S mutant; (1.11 ± 0.03) × 104 min-1 and 2.62 ± 0.042 mM, respectively, for the F96H mutant; and (1.48 ± 0.05) × 105 min-1 and 1.20 ± 0.056 mM, respectively, for the F96W mutant. Unliganded and 3-phosphoglycerate (3PG) complexed structures are reported for the wild-type enzyme and the mutants. The ligand binds to the active sites of the wild-type enzyme (wtPfTIM) and the F96W mutant, with a loop-open state in the former and both open and closed states in the latter. In contrast, no density for the ligand could be detected at the active sites of the F96S and F96H mutants under identical conditions. The decrease in ligand affinity could be a consequence of differences in the water network connecting residue 96 to Ser73 in the vicinity of the active site. Soaking of crystals of wtPfTIM and the F96S and F96H mutants resulted in the binding of 3PG at a dimer-interface site. In addition, loop closure at the liganded active site was observed for wtPfTIM. The dimer-interface site in PfTIM shows strong electrostatic anchoring of the phosphate group involving the Arg98 and Lys112 residues of PfTIM.

Item Type:Article
Source:Copyright of this article belongs to International Union of Crystallography.
Keywords:Plasmodium Falciparum Triosephosphate Isomerase; Dimer-Interface Binding Site; Loop 6 Conformation; Active-Site Hydration; 3-Phosphoglycerate
ID Code:1334
Deposited On:04 Oct 2010 08:19
Last Modified:30 Jan 2023 09:47

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