Items where Author is "Sneppen, Kim"

Article

Eriksen, Rasmus Skytte ; Malhotra, Nitish ; Seshasayee, Aswin Sai Narain ; Sneppen, Kim ; Krishna, Sandeep (2022) Emergence of networks of shared restriction-modification systems in phage–bacteria ecosystems Journal of Biosciences, 47 (3). ISSN 0250-5991

Sneppen, Kim ; Semsey, Szabolcs ; Seshasayee, Aswin S. N. ; Krishna, Sandeep (2015) Restriction modification systems as engines of diversity Frontiers in Microbiology, 6 . ISSN 1664-302X

Heilmann, Silja ; Sneppen, Kim ; Krishna, Sandeep (2012) Coexistence of phage and bacteria on the boundary of self-organized refuges Proceedings of the National Academy of Sciences of the United States of America, 109 (31). pp. 12828-12833. ISSN 0027-8424

Bendtsen, Kristian Moss ; Erdőssy, János ; Csiszovszki, Zsolt ; Svenningsen, Sine Lo ; Sneppen, Kim ; Krishna, Sandeep ; Semsey, Szabolcs (2011) Direct and indirect effects in the regulation of overlapping promoters Nucleic Acids Research, 39 (16). pp. 6879-6885. ISSN 0305-1048

Avlund, Mikkel ; Krishna, Sandeep ; Semsey, Szabolcs ; Dodd, Ian B. ; Sneppen, Kim (2010) Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise PLoS One, 5 (12). e15037. ISSN 1932-6203

Sneppen, Kim ; Pedersen, Steen ; Krishna, Sandeep ; Dodd, Ian ; Semsey, Szabolcs (2010) Economy of operon formation: cotranscription minimizes shortfall in protein complexes mBio, 1 (4). ISSN 2150-7511

Sneppen, Kim ; Krishna, Sandeep ; Semsey, Szabolcs (2010) Simplified models of biological networks Annual Review of Biophysics, 39 (1). pp. 43-59. ISSN 1936-122X

Heilmann, Silja ; Sneppen, Kim ; Krishna, Sandeep (2010) Sustainability of virulence in a phage-bacterial ecosystem Journal of Virology, 84 (6). pp. 3016-3022. ISSN 0022-538X

Avlund, Mikkel ; Dodd, Ian B. ; Semsey, Szabolcs ; Sneppen, Kim ; Krishna, Sandeep (2009) Why Do Phage Play Dice? Journal of Virology, 83 (22). pp. 11416-11420. ISSN 0022-538X

Semsey, Szabolcs ; Benjamin, Julie-Anna M. ; Mitarai, Namiko ; Krishna, Sandeep ; Csiszovszki, Zsolt ; Sneppen, Kim ; Massé, Eric (2009) Dynamics of the recovery from sRNA-mediated gene silencing Cell Cycle, 8 (18). pp. 2863-2864. ISSN 1538-4101

Krishna, Sandeep ; Orosz, László ; Sneppen, Kim ; Adhya, Sankar ; Semsey, Szabolcs (2009) Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli Journal of Molecular Biology, 391 (4). pp. 671-678. ISSN 0022-2836

Semsey, Szabolcs ; Krishna, Sandeep ; Erdőssy, János ; Horváth, Péter ; Orosz, László ; Sneppen, Kim ; Adhya, Sankar (2009) Dominant negative autoregulation limits steady-state repression levels in gene networks Journal of Bacteriology, 191 (14). pp. 4487-4491. ISSN 0021-9193

Mitarai, Namiko ; Benjamin, Julie-Anna M. ; Krishna, Sandeep ; Semsey, Szabolcs ; Csiszovszki, Zsolt ; Massé, Eric ; Sneppen, Kim (2009) Dynamic features of gene expression control by small regulatory RNAs Proceedings of the National Academy of Sciences, India - Part B: Biological Sciences, 106 (26). pp. 10655-10659. ISSN 0073-6600

Maslov, Sergei ; Krishna, Sandeep ; Pang, Tin Yau ; Sneppen, Kim (2009) Toolbox model of evolution of prokaryotic metabolic networks and their regulation Proceedings of the National Academy of Sciences of the United States of America, 106 (24). pp. 9743-9748. ISSN 0027-8424

Werner, Maria ; Semsey, Szabolcs ; Sneppen, Kim ; Krishna, Sandeep (2009) Dynamics of uptake and metabolism of small molecules in cellular response systems PLoS One, 4 (3). e4923. ISSN 1932-6203

Axelsen, Jacob Bock ; Krishna, Sandeep ; Sneppen, Kim (2008) The cost and capacity of signaling in the escherichia coli protein reaction network Journal of Statistical Mechanics: Theory and Experiment, 2008 (01). P01018. ISSN 1742-5468

Krishna, Sandeep ; Semsey, Szabolcs ; Sneppen, Kim (2007) Combinatorics of feedback in cellular uptake and metabolism of small molecules Proceedings of the National Academy of Sciences of the United States of America, 104 (52). pp. 20815-20819. ISSN 0027-8424

Mitarai, Namiko ; Andersson, Anna M C ; Krishna, Sandeep ; Semsey, Szabolcs ; Sneppen, Kim (2007) Efficient degradation and expression prioritization with small RNAs Physical Biology, 4 (3). pp. 164-171. ISSN 1478-3967

Semsey, Szabolcs ; Krishna, Sandeep ; Sneppen, Kim ; Adhya, Sankar (2007) Signal integration in the galactose network of Escherichia coli Molecular Microbiology, 65 (2). pp. 465-476. ISSN 0950-382X

Krishna, Sandeep ; Maslov, Sergei ; Sneppen, Kim (2007) UV-induced mutagenesis in escherichia coli sos response: A quantitative model PLoS Computational Biology, 3 (3). e41. ISSN 1553-734X

Rosvall, Martin ; Dodd, Ian B. ; Krishna, Sandeep ; Sneppen, Kim (2006) Network models of phage-bacteria coevolution Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 74 (6). ISSN 1539-3755

Semsey, Szabolcs ; Andersson, Anna M. C. ; Krishna, Sandeep ; Jensen, Mogens Høgh ; Massé, Eric ; Sneppen, Kim (2006) Genetic regulation of fluxes: iron homeostasis of Escherichia coli Nucleic Acids Research, 34 (17). pp. 4960-4967. ISSN 0305-1048

Krishna, Sandeep ; Jensen, Mogens H. ; Sneppen, Kim (2006) Minimal model of spiky oscillations in NF-κB signaling Proceedings of the National Academy of Sciences of the United States of America, 103 (29). pp. 10840-10845. ISSN 0027-8424

Conference or Workshop Item

Jensen, Mogens H. ; Krishna, Sandeep ; Sneppen, Kim ; Tiana, Guido (2008) Dynamical Genetic Regulation In: Evolution from Cellular to Social Scales, 2008/9/26, Springer Netherlands.