Items where Author is "Semsey, Szabolcs"

Article

Semsey, Szabolcs ; Dani, Pratiksha ; Ujaoney, Aman Kumar ; Apte, Shree Kumar ; Basu, Bhakti (2017) Regulation of potassium dependent ATPase (kdp) operon of Deinococcus radiodurans PLOS ONE, 12 (12). e0188998. ISSN 1932-6203

Sinha, Vaibhhav ; Goyal, Akshit ; Svenningsen, Sine L. ; Semsey, Szabolcs ; Krishna, Sandeep (2017) In silico evolution of lysis-lysogeny strategies reproduces observed lysogeny propensities in temperate bacteriophages Frontiers in Microbiology, 8 . ISSN 1664-302X

Moss Bendtsen, Kristian ; Jensen, Mogens H. ; Krishna, Sandeep ; Semsey, Szabolcs (2015) The role of mRNA and protein stability in the function of coupled positive and negative feedback systems in eukaryotic cells Scientific Reports, 5 (1). ISSN 2045-2322

Hansen, Sabine ; Krishna, Sandeep ; Semsey, Szabolcs ; Lo Svenningsen, Sine (2015) Effects of four different regulatory mechanisms on the dynamics of gene regulatory cascades Scientific Reports, 5 (1). ISSN 2045-2322

Sneppen, Kim ; Semsey, Szabolcs ; Seshasayee, Aswin S. N. ; Krishna, Sandeep (2015) Restriction modification systems as engines of diversity Frontiers in Microbiology, 6 . ISSN 1664-302X

Semsey, Szabolcs ; Krishna, Sandeep (2014) Combining theory and experiments to understand sugar regulation in bacteria Current Chemical Biology, 7 (3). pp. 224-233. ISSN 2212-7968

Sipos, Lilla ; Mengel Pers, Benedicte ; Kalmár, Magda ; Tóth, Ildikó ; Krishna, Sandeep ; Jensen, Mogens H. ; Semsey, Szabolcs (2013) Comparative Network Analysis of Preterm vs. Full-Term Infant-Mother Interactions PLoS One, 8 (6). e67183. ISSN 1932-6203

Mengel Pers, Benedicte ; Krishna, Sandeep ; Chakraborty, Sagar ; Pigolotti, Simone ; Sekara, Vedran ; Semsey, Szabolcs ; Jensen, Mogens H. (2012) Effects of growth and mutation on pattern formation in tissues PLoS One, 7 (11). e48772. ISSN 1932-6203

Chakraborty, Sagar ; Jensen, Mogens H. ; Krishna, Sandeep ; Mengel Pers, Benedicte ; Pigolotti, Simone ; Sekara, Vedran ; Semsey, Szabolcs (2012) Limit-cycle oscillations and stable patterns in repressor lattices Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 86 (3). ISSN 1539-3755

Csiszovszki, Zsolt ; Krishna, Sandeep ; Orosz, László ; Adhya, Sankar ; Semsey, Szabolcs (2011) Structure and function of the d-Galactose network in enterobacteria mBio, 2 (4). ISSN 2150-7511

Bendtsen, Kristian Moss ; Erdőssy, János ; Csiszovszki, Zsolt ; Svenningsen, Sine Lo ; Sneppen, Kim ; Krishna, Sandeep ; Semsey, Szabolcs (2011) Direct and indirect effects in the regulation of overlapping promoters Nucleic Acids Research, 39 (16). pp. 6879-6885. ISSN 0305-1048

Avlund, Mikkel ; Krishna, Sandeep ; Semsey, Szabolcs ; Dodd, Ian B. ; Sneppen, Kim (2010) Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise PLoS One, 5 (12). e15037. ISSN 1932-6203

Horváth, Péter ; Hunziker, Alexander ; Erdőssy, János ; Krishna, Sandeep ; Semsey, Szabolcs (2010) Timing of gene transcription in the galactose utilization system of escherichia coli Journal of Biological Chemistry, 285 (49). pp. 38062-38068. ISSN 0021-9258

Sneppen, Kim ; Pedersen, Steen ; Krishna, Sandeep ; Dodd, Ian ; Semsey, Szabolcs (2010) Economy of operon formation: cotranscription minimizes shortfall in protein complexes mBio, 1 (4). ISSN 2150-7511

Hunziker, Alexander ; Tuboly, Csaba ; Horváth, Péter ; Krishna, Sandeep ; Semsey, Szabolcs (2010) Genetic flexibility of regulatory networks Proceedings of the National Academy of Sciences of the United States of America, 107 (29). pp. 12998-13003. ISSN 0027-8424

Sneppen, Kim ; Krishna, Sandeep ; Semsey, Szabolcs (2010) Simplified models of biological networks Annual Review of Biophysics, 39 (1). pp. 43-59. ISSN 1936-122X

Avlund, Mikkel ; Dodd, Ian B. ; Semsey, Szabolcs ; Sneppen, Kim ; Krishna, Sandeep (2009) Why Do Phage Play Dice? Journal of Virology, 83 (22). pp. 11416-11420. ISSN 0022-538X

Semsey, Szabolcs ; Benjamin, Julie-Anna M. ; Mitarai, Namiko ; Krishna, Sandeep ; Csiszovszki, Zsolt ; Sneppen, Kim ; Massé, Eric (2009) Dynamics of the recovery from sRNA-mediated gene silencing Cell Cycle, 8 (18). pp. 2863-2864. ISSN 1538-4101

Krishna, Sandeep ; Orosz, László ; Sneppen, Kim ; Adhya, Sankar ; Semsey, Szabolcs (2009) Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli Journal of Molecular Biology, 391 (4). pp. 671-678. ISSN 0022-2836

Semsey, Szabolcs ; Krishna, Sandeep ; Erdőssy, János ; Horváth, Péter ; Orosz, László ; Sneppen, Kim ; Adhya, Sankar (2009) Dominant negative autoregulation limits steady-state repression levels in gene networks Journal of Bacteriology, 191 (14). pp. 4487-4491. ISSN 0021-9193

Mitarai, Namiko ; Benjamin, Julie-Anna M. ; Krishna, Sandeep ; Semsey, Szabolcs ; Csiszovszki, Zsolt ; Massé, Eric ; Sneppen, Kim (2009) Dynamic features of gene expression control by small regulatory RNAs Proceedings of the National Academy of Sciences, India - Part B: Biological Sciences, 106 (26). pp. 10655-10659. ISSN 0073-6600

Werner, Maria ; Semsey, Szabolcs ; Sneppen, Kim ; Krishna, Sandeep (2009) Dynamics of uptake and metabolism of small molecules in cellular response systems PLoS One, 4 (3). e4923. ISSN 1932-6203

Krishna, Sandeep ; Semsey, Szabolcs ; Sneppen, Kim (2007) Combinatorics of feedback in cellular uptake and metabolism of small molecules Proceedings of the National Academy of Sciences of the United States of America, 104 (52). pp. 20815-20819. ISSN 0027-8424

Mitarai, Namiko ; Andersson, Anna M C ; Krishna, Sandeep ; Semsey, Szabolcs ; Sneppen, Kim (2007) Efficient degradation and expression prioritization with small RNAs Physical Biology, 4 (3). pp. 164-171. ISSN 1478-3967

Semsey, Szabolcs ; Krishna, Sandeep ; Sneppen, Kim ; Adhya, Sankar (2007) Signal integration in the galactose network of Escherichia coli Molecular Microbiology, 65 (2). pp. 465-476. ISSN 0950-382X

Semsey, Szabolcs ; Andersson, Anna M. C. ; Krishna, Sandeep ; Jensen, Mogens Høgh ; Massé, Eric ; Sneppen, Kim (2006) Genetic regulation of fluxes: iron homeostasis of Escherichia coli Nucleic Acids Research, 34 (17). pp. 4960-4967. ISSN 0305-1048

Roy, Siddhartha ; Semsey, Szabolcs ; Liu, Mofang ; Gussin, Gary N. ; Adhya, Sankar (2004) GalR represses galP1 by inhibiting the rate-determining open complex formation through RNA polymerase contact: a GalR negative control mutant Journal of Molecular Biology, 344 (3). pp. 609-618. ISSN 0022-2836