Items where Author is "Raghava, G. P. S."

Agarwal, Subhash M. ; Dhwani, Raghav ; Singh, Harinder ; Raghava, G. P. S. (2011) CCDB: a curated database of genes involved in cervix cancer Nucleic Acids Research, 39 (Suppl.). D975-D979. ISSN 0305-1048

Ansari, Hifzur Rahman ; Flower, Darren R. ; Raghava, G. P. S. (2010) AntigenDB: an immunoinformatics database of pathogen antigens Nucleic Acids Research, 38 (Suppl.). D847-D853. ISSN 0305-1048

Lata, Sneh ; Raghava, G. P. S. (2010) Databases and web-based tools for innate immunity Bioinformatics, 3 . pp. 67-76. ISSN 1367-4803

Lata, Sneh ; Raghava, G. P. S. (2009) Prediction and classification of chemokines and their receptors Protein Engineering, Design and Selection, 22 (7). pp. 441-444. ISSN 1741-0126

Verma, Ruchi ; Varshney, Grish C. ; Raghava, G. P. S. (2009) Prediction of mitochondrial proteins of malaria parasite using split amino acid composition and PSSM profile Amino Acids, 39 (1). pp. 101-110. ISSN 0939-4451

Kush, Amit ; Raghava, G. P. S. (2008) AC2DGel: analysis and comparison of 2D gels Journal of Proteomics & Bioinformatics, 1 (1). pp. 43-46. ISSN 0974-276X

Vivona, Sandro ; Gardy, Jennifer L. ; Ramachandran, Srinivasan ; Brinkman, Fiona S. L. ; Raghava, G. P. S. ; Flower, Darren R. ; Filippini, Francesco (2008) Computer-aided biotechnology: from immuno-informatics to reverse vaccinology Trends in Biotechnology, 26 (4). pp. 190-200. ISSN 0167-7799

Kumar, Manish ; Gromiha, Michael M. ; Raghava, G. P. S. (2008) Prediction of RNA binding sites in a protein using SVM and PSSM profile Proteins: Structure, Function, and Bioinformatics, 71 (1). pp. 189-194. ISSN 0887-3585

Lata, Sneh ; Raghava, G. P. S. (2008) CytoPred: a server for prediction and classification of cytokines Protein Engineering, Design and Selection, 21 (4). pp. 279-282. ISSN 1741-0126

Sethi, Deepti ; Garg, Aarti ; Raghava, G. P. S. (2008) DPROT: prediction of disordered proteins using evolutionary information Amino Acids, 35 (3). pp. 599-605. ISSN 0939-4451

Lata, Sneh ; Sharma, B. K. ; Raghava, G. P. S. (2007) Analysis and prediction of antibacterial peptides BMC Bioinformatics, 8 . 263_1-263_10. ISSN 1471-2105

Kaur, Harpreet ; Garg, Aarti ; Raghava, G. P. S. (2007) PEPstr: a de novo method for tertiary structure prediction of small bioactive peptides Protein and Peptide Letters, 14 (7). pp. 626-631. ISSN 0929-8665

Mishra, Nitish Kumar ; Kumar, Manish ; Raghava, G. P. S. (2007) Support vector machine based prediction of glutathione S-transferase proteins Protein and Peptide Letters, 14 (6). pp. 575-580. ISSN 0929-8665

Greenbaum, Jason A. ; Andersen, Pernille Haste ; Blythe, Martin ; Bui, Huynh-Hoa ; Cachau, Raul E. ; Crowe, James ; Davies, Matthew ; Kolaskar, A. S. ; Lund, Ole ; Morrison, Sherrie ; Mumey, Brendan ; Ofran, Yanay ; Pellequer, Jean-Luc ; Pinilla, Clemencia ; Ponomarenko, Julia V. ; Raghava, G. P. S. ; van Regenmortel, Marc H. V. ; Roggen, Erwin L. ; Sette, Alessandro ; Schlessinger, Avner ; Sollner, Johannes ; Zand, Martin ; Peters, Bjoern (2007) Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools Journal of Molecular Recognition, 20 (2). pp. 75-82. ISSN 0952-3499

Bhasin, Manoj ; Raghava, G. P. S. (2007) A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes Journal of Biosciences, 32 (1). pp. 31-42. ISSN 0250-5991

Muthukrishnan, S. ; Garg, Aarti ; Raghava, G. P. S. (2007) Oxypred: prediction and classification of oxygen-binding proteins Genomics, Proteomics & Bioinformatics, 5 (3-4). pp. 250-252. ISSN 1672-0229

Saha, Sudipto ; Raghava, G. P. S. (2006) Prediction of continuous B-cell epitopes in an antigen using recurrent neural network Proteins: Structure, Function, and Bioinformatics, 65 (1). pp. 40-48. ISSN 0887-3585

Raghava, G. P. S. ; Barton, Geoffrey J. (2006) Quantification of the variation in percentage identity for protein sequence alignments BMC Bioinformatics, 7 . 415_1-415_4. ISSN 1471-2105

Saha, Sudipto ; Raghava, G. P. S. (2006) AlgPred: prediction of allergenic proteins and mapping of IgE epitopes Nucleic Acids Research, 34 (Suppl.). W202-W209. ISSN 0305-1048

Kim, Jong Kyoung ; Raghava, G. P. S. ; Bang, Sung-Yang ; Choi, Seungjin (2006) Prediction of subcellular localization of proteins using pairwise sequence alignment and support vector machine Pattern Recognition Letters, 27 (9). pp. 996-1001. ISSN 0167-8655

Singh, Mahender Kumar ; Srivastava, Shilpy ; Raghava, G. P. S. ; Varshney, Grish C. (2006) HaptenDB: a comprehensive database of haptens, carrier proteins and anti-hapten antibodies Bioinformatics, 22 (2). pp. 253-255. ISSN 1367-4803

Saha, Sudipto ; Zack, Jyoti ; Singh, Balvinder ; Raghava, G. P. S. (2006) VGIchan: prediction and classification of voltage-gated ion channels Genomics, Proteomics & Bioinformatics, 4 (4). pp. 253-258. ISSN 1672-0229

Saha, Sudipto ; Raghava, G. P. S. (2006) VICMpred: an SVM-based method for the prediction of functional proteins of gram-negative bacteria using amino acid patterns and composition Genomics, Proteomics & Bioinformatics, 4 (1). pp. 42-47. ISSN 1672-0229

Garg, Aarti ; Kaur, Harpreet ; Raghava, G. P. S. (2005) Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure Proteins: Structure, Function, and Bioinformatics, 61 (2). pp. 318-324. ISSN 0887-3585

Kumar, Manish ; Bhasin, Manoj ; Natt, Navjot K. ; Raghava, G. P. S. (2005) BhairPred: prediction of β-hairpins in a protein from multiple alignment information using ANN and SVM techniques Nucleic Acids Research, 33 (Suppl.). W154-W159. ISSN 0305-1048

Bhasin, Manoj ; Raghava, G. P. S. (2005) Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences Nucleic Acids Research, 33 (Suppl.). W202-W207. ISSN 0305-1048

Bhasin, Manoj ; Garg, Aarti ; Raghava, G. P. S. (2005) PSLpred: prediction of subcellular localization of bacterial proteins Bioinformatics, 21 (10). pp. 2522-2524. ISSN 1367-4803

Bhasin, Manoj ; Raghava, G. P. S. (2004) GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors Nucleic Acids Research, 33 (Suppl.). W143-W147. ISSN 0305-1048

Kaur, Harpreet ; Raghava, G. P. S. (2004) A neural network method for prediction of β-turn types in proteins using evolutionary information Bioinformatics, 20 (16). pp. 2751-2758. ISSN 1367-4803

Bhasin, Manoj ; Raghava, G. P. S. (2004) Prediction of CTL epitopes using QM, SVM and ANN techniques Vaccine, 22 (23-24). pp. 3195-3204. ISSN 0264-410X

Bhasin, Manoj ; Raghava, G. P. S. (2004) Prediction of promiscuous and high-affinity mutated MHC binders Hybridoma and Hybridomics, 22 (4). pp. 229-234. ISSN 1536-8599

Bhasin, Manoj ; Raghava, G. P. S. (2004) ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST Nucleic Acids Research, 32 (2). W414-W419. ISSN 0305-1048

Bhasin, Manoj ; Raghava, G. P. S. (2004) GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors Nucleic Acids Research, 32 (2). W383-W389. ISSN 0305-1048

Singh, Harpreet ; Raghava, G. P. S. (2004) Detection of orientation of MHC class II binding peptides using bioinformatics tools Biotech Software & Internet Report, 3 (5-6). pp. 146-150. ISSN 1527-9162

Natt, Navjyot K. ; Kaur, Harpreet ; Raghava, G. P. S. (2004) Prediction of transmembrane regions of β-barrel proteins using ANN- and SVM-based methods Proteins: Structure, Function, and Bioinformatics, 56 (1). pp. 11-18. ISSN 0887-3585

Sharma, Deepak ; Issac, Biju ; Raghava, G. P. S. ; Ramaswamy, R. (2004) Spectral repeat finder (SRF): identification of repetitive sequences using Fourier transformation Bioinformatics, 20 (9). pp. 1405-1412. ISSN 1367-4803

Kaur, Harpreet ; Raghava, G. P. S. (2004) Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins FEBS Letters, 564 (1). pp. 47-57. ISSN 0014-5793

Kaur, Harpreet ; Raghava, G. P. S. (2004) Prediction of α-turns in proteins using PSI-BLAST profiles and secondary structure information Proteins: Structure, Function, and Genetics, 55 (1). pp. 83-90. ISSN 0887-3585

Bhasin, Manoj ; Raghava, G. P. S. (2004) Analysis and prediction of affinity of TAP binding peptides using cascade SVM Protein Science, 13 (3). pp. 596-607. ISSN 0961-8368

Bhasin, Manoj ; Raghava, G. P. S. (2004) SVM based method for predicting HLA-DRB1^∗0401 binding peptides in an antigen sequence Bioinformatics, 20 (3). pp. 421-423. ISSN 1367-4803

Saha, Sudipto ; Raghava, G. P. S. (2004) BcePred: prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties Lecture Notes in Computer Science, 3239 . pp. 197-204. ISSN 0302-9743

Raghava, G. P. S. ; Searle, Stephen M. J. ; Audley, Patrick C. ; Barber, Jonathan D. ; Barton, Geoffrey J. (2003) OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy BMC Bioinformatics, 4 (47). pp. 1-23. ISSN 1471-2105

Singh, Harpreet ; Raghava, G. P. S. (2003) ProPred1: prediction of promiscuous MHC class-I binding sites Bioinformatics, 19 (8). pp. 1009-1014. ISSN 1367-4803

Kaur, Harpreet ; Raghava, G. P. S. (2003) A neural-network based method for prediction of γ-turns in proteins from multiple sequence alignment Protein Science, 12 (5). pp. 923-929. ISSN 0961-8368

Bhasin, Manoj ; Singh, Harpreet ; Raghava, G. P. S. (2003) MHCBN: a comprehensive database of MHC binding and non-binding peptides Bioinformatics, 19 (5). pp. 665-666. ISSN 1367-4803

Kaur, Harpreet ; Raghava, G. P. S. (2003) Prediction of β-turns in proteins from multiple alignment using neural network Protein Science, 12 (3). pp. 627-634. ISSN 0961-8368

Kaur, Harpreet ; Raghava, G. P. S. (2003) BTEVAL: a server for evaluation of beta-turn prediction methods Journal of Bioinformatics and Computational Biology, 1 (3). pp. 495-504. ISSN 0219-7200

Issac, B. ; Raghava, G. P. S. (2002) GWFASTA: server for FASTA search in eukaryotic and microbial genomes Biotechniques, 33 (3). pp. 548-556. ISSN 0736-6205

Kaur, Harpreet ; Raghava, G. P. S. (2002) BetaTPred: prediction of β-TURNS in a protein using statistical algorithms Bioinformatics, 18 (3). pp. 498-499. ISSN 1367-4803

Issac, Biju ; Singh, Harpreet ; Kaur, Harpreet ; Raghava, G. P. S. (2002) Locating probable genes using Fourier transform approach Bioinformatics, 18 (1). pp. 196-197. ISSN 1367-4803

Kaur, Harpreet ; Raghava, G. P. S. (2002) An evaluation of β-turn prediction methods Bioinformatics, 18 (11). pp. 1508-1514. ISSN 1367-4803

Singh, Harpreet ; Raghava, G. P. S. (2001) ProPred: prediction of HLA-DR binding sites Bioinformatics, 17 (12). pp. 1236-1237. ISSN 1367-4803

Raghava, G. P. S. (2001) A web server for computing the size of DNA/protein fragments using a graphical method Biotech Software and Internet Report, 2 (5). pp. 198-200. ISSN 1527-9162

Raghava, G. P. S. ; Agrewala, Javed N. (2001) A web-based method for computing endpoint titer and concentration of antibody/antigen Biotech Software & Internet Report, 2 (5). pp. 196-197. ISSN 1527-9162

Raghava, G. P. S. (2001) PDWSB: Public Domain Web Servers in Biology Biotech Software and Internet Report, 2 (4). pp. 152-153. ISSN 1527-9162

Raghava, G. P. S. (2001) PDSB: Public Domain Software in Biology Biotech Software and Internet Report, 2 (4). pp. 154-156. ISSN 1527-9162

Nihalani, Deepak ; Raghava, G. P. S. ; Sahni, Girish (1997) Mapping of the plasminogen binding site of streptokinase with short synthetic peptides Protein Science, 6 (6). pp. 1284-1292. ISSN 0961-8368

Raghava, G. P. S. (1994) Improved estimation of DNA fragment length from gel electrophoresis data using a graphical method Biotechniques, 17 (1). pp. 100-104. ISSN 0736-6205

Raghava, G. P. S. ; Sahni, G. (1994) GMAP: a multi-purpose computer program to aid synthetic gene design, cassette mutagenesis and the introduction of potential restriction sites into DNA sequences Biotechniques, 16 (6). pp. 1116-1123. ISSN 0736-6205

Raghava, G. P. S. ; Agrewala, Javed N. (1994) Method for determining the affinity of monoclonal antibody using non-competitive ELISA: a computer program Journal of Immunoassay and Immunochemistry, 15 (2). pp. 115-128. ISSN 1532-1819

Raghava, G. P. S. ; Goel, A. ; Singh, A. M. ; Varshney, G. C. (1994) A simple microassay for computing the hemolytic potency of drugs Biotechniques, 17 (6). pp. 1148-1153. ISSN 0736-6205

Agrewala, Javed N. ; Raghava, G. P. S. ; Mishra, Gyan C. (1993) Measurement and computation of murine interleukin-4 and interferon-γ by exploiting the unique abilities of these lymphokines to induce the secretion of IgG1 and IgG2a Journal of Immunoassay, 14 (1-2). pp. 83-97. ISSN 0197-1522

Raghava, G. P. S. ; Joshi, A. K. ; Agrewala, J. N. (1992) Calculation of antibody and antigen concentrations from ELISA data using a graphical method Journal of Immunological Methods, 153 (1-2). pp. 263-264. ISSN 0022-1759