Items where Author is "Garg, Vanika"

Article

Singh, Sadhana ; Kudapa, Himabindu ; Garg, Vanika ; Varshney, Rajeev (2020) Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops BMC Genomics . ISSN 1471-2164

Agarwal, Gaurav ; Kudapa, Himabindu ; Ramalingam, Abirami ; Choudhary, Divya ; Sinha, Pallavi ; Garg, Vanika ; Singh, Vikas K ; Patil, Gunvant B ; Pandey, Manish K ; Nguyen, Henry T ; Guo, Baozhu ; Sunkar, Ramanjulu ; Niederhuth, Chad E ; Varshney, Rajeev K (2020) Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement Functional & Integrative Genomics, 20 (6). pp. 739-761. ISSN 1438-793X

Bhogireddy, Sailaja ; Xavier, Abishek ; Garg, Vanika ; Layland, Nancy ; Arias, Renee ; Payton, Paxton ; Nayak, Spurthi N. ; Pandey, Manish K. ; Puppala, Naveen ; Varshney, Rajeev K. (2020) Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms Scientific Reports, 10 (1). ISSN 2045-2322

Sinha, Pallavi ; Singh, Vikas K. ; Saxena, Rachit K. ; Kale, Sandip M. ; Li, Yuqi ; Garg, Vanika ; Meifang, Tang ; Khan, Aamir W. ; Kim, Kyung Do ; Chitikineni, Annapurna ; Saxena, K. B. ; Sameer Kumar, C. V. ; Liu, Xin ; Xu, Xun ; Jackson, Scott ; Powell, Wayne ; Nevo, Eviatar ; Searle, Iain R. ; Lodha, Mukesh ; Varshney, Rajeev K. (2020) Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea Plant Biotechnology, 18 (8). pp. 1697-1710. ISSN 1467-7644

Obala, Jimmy ; Saxena, Rachit K. ; Singh, Vikas K. ; Kale, Sandip M. ; Garg, Vanika ; Kumar, C. V. Sameer ; Saxena, K. B. ; Tongoona, Pangirayi ; Sibiya, Julia ; Varshney, Rajeev K. (2020) Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs Scientific Reports, 10 (1). ISSN 2045-2322

Khan, Aamir W. ; Garg, Vanika ; Roorkiwal, Manish ; Golicz, Agnieszka A. ; Edwards, David ; Varshney, Rajeev K. (2020) Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement Trends in Plant Science, 25 (2). pp. 148-158. ISSN 1360-1385

Parida, Swarup Kumar ; Jain, Ankit ; Roorkiwal, Manish ; Kale, Sandip ; Garg, Vanika ; Yadala, Ramakrishna ; Varshney, Rajeev K. (2019) InDel markers: An extended marker resource for molecular breeding in chickpea PLoS One, 14 (3). e0213999. ISSN 1932-6203

Garg, Vanika ; Khan, Aamir W. ; Kudapa, Himabindu ; Kale, Sandip M. ; Chitikineni, Annapurna ; Qiwei, Sun ; Sharma, Mamta ; Li, Chuanying ; Zhang, Baohong ; Xin, Liu ; Kishor, P.B. Kavi ; Varshney, Rajeev K. (2019) Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea Plant Biotechnology, 17 (5). pp. 914-931. ISSN 1467-7644

Varshney, Rajeev K. ; Thudi, Mahendar ; Roorkiwal, Manish ; He, Weiming ; Upadhyaya, Hari D. ; Yang, Wei ; Bajaj, Prasad ; Cubry, Philippe ; Rathore, Abhishek ; Jian, Jianbo ; Doddamani, Dadakhalandar ; Khan, Aamir W. ; Garg, Vanika ; Chitikineni, Annapurna ; Xu, Dawen ; Gaur, Pooran M. ; Singh, Narendra P. ; Chaturvedi, Sushil K. ; Nadigatla, Gangarao V. P. R. ; Krishnamurthy, Lakshmanan ; Dixit, G. P. ; Fikre, Asnake ; Kimurto, Paul K. ; Sreeman, Sheshshayee M. ; Bharadwaj, Chellapilla ; Tripathi, Shailesh ; Wang, Jun ; Lee, Suk-Ha ; Edwards, David ; Polavarapu, Kavi Kishor Bilhan ; Penmetsa, R. Varma ; Crossa, José ; Nguyen, Henry T. ; Siddique, Kadambot H. M. ; Colmer, Timothy D. ; Sutton, Tim ; von Wettberg, Eric ; Vigouroux, Yves ; Xu, Xun ; Liu, Xin (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits Nature Genetics, 51 (5). pp. 857-864. ISSN 1061-4036

Zhuang, Weijian ; Chen, Hua ; Yang, Meng ; Wang, Jianping ; Pandey, Manish K. ; Zhang, Chong ; Chang, Wen-Chi ; Zhang, Liangsheng ; Zhang, Xingtan ; Tang, Ronghua ; Garg, Vanika ; Wang, Xingjun ; Tang, Haibao ; Chow, Chi-Nga ; Wang, Jinpeng ; Deng, Ye ; Wang, Depeng ; Khan, Aamir W. ; Yang, Qiang ; Cai, Tiecheng ; Bajaj, Prasad ; Wu, Kangcheng ; Guo, Baozhu ; Zhang, Xinyou ; Li, Jingjing ; Liang, Fan ; Hu, Jiang ; Liao, Boshou ; Liu, Shengyi ; Chitikineni, Annapurna ; Yan, Hansong ; Zheng, Yixiong ; Shan, Shihua ; Liu, Qinzheng ; Xie, Dongyang ; Wang, Zhenyi ; Khan, Shahid Ali ; Ali, Niaz ; Zhao, Chuanzhi ; Li, Xinguo ; Luo, Ziliang ; Zhang, Shubiao ; Zhuang, Ruirong ; Peng, Ze ; Wang, Shuaiyin ; Mamadou, Gandeka ; Zhuang, Yuhui ; Zhao, Zifan ; Yu, Weichang ; Xiong, Faqian ; Quan, Weipeng ; Yuan, Mei ; Li, Yu ; Zou, Huasong ; Xia, Han ; Zha, Li ; Fan, Junpeng ; Yu, Jigao ; Xie, Wenping ; Yuan, Jiaqing ; Chen, Kun ; Zhao, Shanshan ; Chu, Wenting ; Chen, Yuting ; Sun, Pengchuan ; Meng, Fanbo ; Zhuo, Tao ; Zhao, Yuhao ; Li, Chunjuan ; He, Guohao ; Zhao, Yongli ; Wang, Congcong ; Kavikishor, Polavarapu Bilhan ; Pan, Rong-Long ; Paterson, Andrew H. ; Wang, Xiyin ; Ming, Ray ; Varshney, Rajeev K. (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication Nature Genetics, 51 (5). pp. 865-876. ISSN 1061-4036

Singh, Satbeer ; Gupta, S. K. ; Thudi, Mahendar ; Das, Roma Rani ; Vemula, Anilkumar ; Garg, Vanika ; Varshney, R. K. ; Rathore, Abhishek ; Pahuja, S. K. ; Yadav, Dev Vart (2018) Genetic Diversity Patterns and Heterosis Prediction Based on SSRs and SNPs in Hybrid Parents of Pearl Millet Crop Science, 58 (6). pp. 2379-2390. ISSN 0011-183X

Roorkiwal, Manish ; Jarquin, Diego ; Singh, Muneendra K. ; Gaur, Pooran M. ; Bharadwaj, Chellapilla ; Rathore, Abhishek ; Howard, Reka ; Srinivasan, Samineni ; Jain, Ankit ; Garg, Vanika ; Kale, Sandip ; Chitikineni, Annapurna ; Tripathi, Shailesh ; Jones, Elizabeth ; Robbins, Kelly R. ; Crossa, Jose ; Varshney, Rajeev K. (2018) Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea Scientific Reports, 8 (1). ISSN 2045-2322

Khedikar, Yogendra ; Pandey, Manish K. ; Sujay, V. ; Singh, Sube ; Nayak, Spurthi N. ; Klein-Gebbinck, Henry W. ; Sarvamangala, Cholin ; Mukri, Ganapati ; Garg, Vanika ; Upadhyaya, Hari D. ; Nadaf, H. L. ; Gowda, M. V. C. ; Varshney, Rajeev K. ; Bhat, Ramesh S. (2018) Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.) Molecular Breeding, 38 (1). ISSN 1380-3743

Prasad, Manoj ; Mahdavi Mashaki, Keyvan ; Garg, Vanika ; Nasrollahnezhad Ghomi, Ali Asghar ; Kudapa, Himabindu ; Chitikineni, Annapurna ; Zaynali Nezhad, Khalil ; Yamchi, Ahad ; Soltanloo, Hasan ; Varshney, Rajeev Kumar ; Thudi, Mahendar (2018) RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.) PLoS One, 13 (6). e0199774. ISSN 1932-6203

Kudapa, Himabindu ; Garg, Vanika ; Chitikineni, Annapurna ; Varshney, Rajeev K. (2018) The RNA-Seq-based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development Plant, Cell & Environment, 41 (9). pp. 2209-2225. ISSN 0140-7791

Saxena, Rachit K. ; Singh, Vikas K. ; Kale, Sandip M. ; Tathineni, Revathi ; Parupalli, Swathi ; Kumar, Vinay ; Garg, Vanika ; Das, Roma R. ; Sharma, Mamta ; Yamini, K. N. ; Muniswamy, S. ; Ghanta, Anuradha ; Rathore, Abhishek ; Kumar, C. V. Sameer ; Saxena, K. B. ; Kishor, P. B. Kavi ; Varshney, Rajeev K. (2017) Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea Scientific Reports, 7 (1). ISSN 2045-2322

Pazhamala, Lekha T. ; Purohit, Shilp ; Saxena, Rachit K. ; Garg, Vanika ; Krishnamurthy, L. ; Verdier, Jerome ; Varshney, Rajeev K. (2017) Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation Journal of Experimental Botany, 68 (8). pp. 2037-2054. ISSN 0022-0957

Vishwakarma, Manish K. ; Kale, Sandip M. ; Sriswathi, Manda ; Naresh, Talari ; Shasidhar, Yaduru ; Garg, Vanika ; Pandey, Manish K. ; Varshney, Rajeev K. (2017) Genome-Wide Discovery and Deployment of Insertions and Deletions Markers Provided Greater Insights on Species, Genomes, and Sections Relationships in the Genus Arachis Frontiers in Plant Science, 8 . ISSN 1664-462X

Garg, Vanika ; Agarwal, Gaurav ; Pazhamala, Lekha T. ; Nayak, Spurthi N. ; Kudapa, Himabindu ; Khan, Aamir W. ; Doddamani, Dadakhalandar ; Sharma, Mamta ; Kavi Kishor, P. B. ; Varshney, Rajeev K. (2017) Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops Frontiers in Plant Science, 8 . ISSN 1664-462X

Saxena, Rachit K. ; Kale, Sandip M. ; Kumar, Vinay ; Parupali, Swathi ; Joshi, Shourabh ; Singh, Vikas ; Garg, Vanika ; Das, Roma R. ; Sharma, Mamta ; Yamini, K. N. ; Ghanta, Anuradha ; Rathore, Abhishek ; Sameerkumar, C. V. ; Saxena, K. B. ; Varshney, Rajeev K. (2017) Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea Scientific Reports, 7 (1). ISSN 2045-2322

Varshney, Rajeev K ; Shi, Chengcheng ; Thudi, Mahendar ; Mariac, Cedric ; Wallace, Jason ; Qi, Peng ; Zhang, He ; Zhao, Yusheng ; Wang, Xiyin ; Rathore, Abhishek ; Srivastava, Rakesh K ; Chitikineni, Annapurna ; Fan, Guangyi ; Bajaj, Prasad ; Punnuri, Somashekhar ; Gupta, S K ; Wang, Hao ; Jiang, Yong ; Couderc, Marie ; Katta, Mohan A V S K ; Paudel, Dev R ; Mungra, K D ; Chen, Wenbin ; Harris-Shultz, Karen R ; Garg, Vanika ; Desai, Neetin ; Doddamani, Dadakhalandar ; Kane, Ndjido Ardo ; Conner, Joann A ; Ghatak, Arindam ; Chaturvedi, Palak ; Subramaniam, Sabarinath ; Yadav, Om Parkash ; Berthouly-Salazar, Cécile ; Hamidou, Falalou ; Wang, Jianping ; Liang, Xinming ; Clotault, Jérémy ; Upadhyaya, Hari D ; Cubry, Philippe ; Rhoné, Bénédicte ; Gueye, Mame Codou ; Sunkar, Ramanjulu ; Dupuy, Christian ; Sparvoli, Francesca ; Cheng, Shifeng ; Mahala, R S ; Singh, Bharat ; Yadav, Rattan S ; Lyons, Eric ; Datta, Swapan K ; Hash, C Tom ; Devos, Katrien M ; Buckler, Edward ; Bennetzen, Jeffrey L ; Paterson, Andrew H ; Ozias-Akins, Peggy ; Grando, Stefania ; Wang, Jun ; Mohapatra, Trilochan ; Weckwerth, Wolfram ; Reif, Jochen C ; Liu, Xin ; Vigouroux, Yves ; Xu, Xun (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments Nature Biotechnology, 35 (10). pp. 969-976. ISSN 1087-0156

Pandey, Manish K. ; Khan, Aamir W. ; Singh, Vikas K. ; Vishwakarma, Manish K. ; Shasidhar, Yaduru ; Kumar, Vinay ; Garg, Vanika ; Bhat, Ramesh S. ; Chitikineni, Annapurna ; Janila, Pasupuleti ; Guo, Baozhu ; Varshney, Rajeev K. (2017) QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.) Plant Biotechnology Journal, 15 (8). pp. 927-941. ISSN 1467-7644

Chen, Xiaoping ; Li, Hongjie ; Pandey, Manish K. ; Yang, Qingli ; Wang, Xiyin ; Garg, Vanika ; Li, Haifen ; Chi, Xiaoyuan ; Doddamani, Dadakhalandar ; Hong, Yanbin ; Upadhyaya, Hari ; Guo, Hui ; Khan, Aamir W. ; Zhu, Fanghe ; Zhang, Xiaoyan ; Pan, Lijuan ; Pierce, Gary J. ; Zhou, Guiyuan ; Krishnamohan, Katta A. V. S. ; Chen, Mingna ; Zhong, Ni ; Agarwal, Gaurav ; Li, Shuanzhu ; Chitikineni, Annapurna ; Zhang, Guo-Qiang ; Sharma, Shivali ; Chen, Na ; Liu, Haiyan ; Janila, Pasupuleti ; Li, Shaoxiong ; Wang, Min ; Wang, Tong ; Sun, Jie ; Li, Xingyu ; Li, Chunyan ; Wang, Mian ; Yu, Lina ; Wen, Shijie ; Singh, Sube ; Yang, Zhen ; Zhao, Jinming ; Zhang, Chushu ; Yu, Yue ; Bi, Jie ; Zhang, Xiaojun ; Liu, Zhong-Jian ; Paterson, Andrew H. ; Wang, Shuping ; Liang, Xuanqiang ; Varshney, Rajeev K. ; Yu, Shanlin (2016) Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens PNAS, 113 (24). pp. 6785-6790. ISSN 0027-8424

Kumar, Vinay ; Khan, Aamir W. ; Saxena, Rachit K. ; Garg, Vanika ; Varshney, Rajeev K. (2016) First‐generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations Plant Biotechnology, 14 (8). pp. 1673-1681. ISSN 1467-7644

Agarwal, Gaurav ; Garg, Vanika ; Kudapa, Himabindu ; Doddamani, Dadakhalandar ; Pazhamala, Lekha T. ; Khan, Aamir W. ; Thudi, Mahendar ; Lee, Suk-Ha ; Varshney, Rajeev K. (2016) Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea Plant Biotechnology, 14 (7). pp. 1563-1577. ISSN 1467-7644

Singh, Vikas K. ; Khan, Aamir W. ; Saxena, Rachit K. ; Kumar, Vinay ; Kale, Sandip M. ; Sinha, Pallavi ; Chitikineni, Annapurna ; Pazhamala, Lekha T. ; Garg, Vanika ; Sharma, Mamta ; Sameer Kumar, Chanda Venkata ; Parupalli, Swathi ; Vechalapu, Suryanarayana ; Patil, Suyash ; Muniswamy, Sonnappa ; Ghanta, Anuradha ; Yamini, Kalinati Narasimhan ; Dharmaraj, Pallavi Subbanna ; Varshney, Rajeev K. (2016) Next‐generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea ( C ajanus cajan ) Plant Biotechnology, 14 (5). pp. 1183-1194. ISSN 1467-7644

Singh, Vikas K. ; Khan, Aamir W. ; Jaganathan, Deepa ; Thudi, Mahendar ; Roorkiwal, Manish ; Takagi, Hiroki ; Garg, Vanika ; Kumar, Vinay ; Chitikineni, Annapurna ; Gaur, Pooran M. ; Sutton, Tim ; Terauchi, Ryohei ; Varshney, Rajeev K. (2016) QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea Plant Biotechnology, 14 (11). pp. 2110-2119. ISSN 1467-7644

Thudi, Mahendar ; Khan, Aamir W. ; Kumar, Vinay ; Gaur, Pooran M. ; Katta, Krishnamohan ; Garg, Vanika ; Roorkiwal, Manish ; Samineni, Srinivasan ; Varshney, Rajeev K. (2016) Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.) BMC Plant Biology, 16 (S1). ISSN 1471-2229

Ramalingam, Abirami ; Kudapa, Himabindu ; Pazhamala, Lekha T. ; Garg, Vanika ; Varshney, Rajeev K. (2015) Gene Expression and Yeast Two-Hybrid Studies of 1R-MYB Transcription Factor Mediating Drought Stress Response in Chickpea (Cicer arietinum L.) Frontiers in Plant Science, 6 . ISSN 1664-462X

Kale, Sandip M ; Jaganathan, Deepa ; Ruperao, Pradeep ; Chen, Charles ; Punna, Ramu ; Kudapa, Himabindu ; Thudi, Mahendar ; Roorkiwal, Manish ; Katta, Mohan AVSK ; Doddamani, Dadakhalandar ; Garg, Vanika ; Kishor, P B Kavi ; Gaur, Pooran M ; Nguyen, Henry T ; Batley, Jacqueline ; Edwards, David ; Sutton, Tim ; Varshney, Rajeev K (2015) Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.) Scientific Reports, 5 (1). ISSN 2045-2322