%X Asia harbors substantial cultural and linguistic diversity, but the geographic structure of genetic variation across the continent remains enigmatic. Here we report a large-scale survey of autosomal variation from a broad geographic sample of Asian human populations. Our results show that genetic ancestry is strongly correlated with linguistic affiliations as well as geography. Most populations show relatedness within ethnic/linguistic groups, despite prevalent gene flow among populations. More than 90% of East Asian (EA) haplotypes could be found in either Southeast Asian (SEA) or Central-South Asian (CSA) populations and show clinal structure with haplotype diversity decreasing from south to north. Furthermore, 50% of EA haplotypes were found in SEA only and 5% were found in CSA only, indicating that SEA was a major geographic source of EA populations. %A Mahmood Ameen Abdulla %A Ikhlak Ahmed %A Anunchai Assawamakin %A Jong Bhak %A Samir K. Brahmachari %A Gayvelline C. Calacal %A Amit Chaurasia %A Chien-Hsiun Chen %A Jieming Chen %A Yuan-Tsong Chen %A P. P.; . . . (The HUGO Pan-Asian SNP Consortium) . . . ; Majumder %L iaseprints73352 %R 10.1126/science.1177074 %I American Association for the Advancement of Science %D 2009 %V 326 %N 5959 %J Science %T Mapping human genetic diversity in Asia %O Copyright of this article belongs to American Association for the Advancement of Science. %P 1541-1545